CircRNA Information

General Information
circRNA Basic Information
CircID chr16:11846514|11846742
Strand -
CircType exon
Host Gene ENSG00000171490.11;
Algorism CIRI2;
Sequence TTTTAGAAATGTTTAAGACTGTTCCACCTATACAGTCATTGATCTCTCTTGATAAATTCTTGGACAGAAGGTTTACAGATACTGGAACTCTACAAAATAAACACACAGGCATTCAGAACACAATGCATACACACCTAGAAGCTTCATGCTGCTAAAGTCCAGTCATTACTAAGAAACTTACTTCTTTCTTTGATAGAAATGTCTCCCAATGAGTGAGGGTAAGAGCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:11846514|11846742 hsa-miR-15a-5p 0 0 1
chr16:11846514|11846742 hsa-miR-15a-3p 0 0 1
chr16:11846514|11846742 hsa-miR-30a-5p 0 0 1
chr16:11846514|11846742 hsa-miR-30a-3p 0 0 1
chr16:11846514|11846742 hsa-miR-33a-5p 0 0 1
chr16:11846514|11846742 hsa-miR-33a-3p 0 0 1
chr16:11846514|11846742 hsa-miR-107 0 0 1
chr16:11846514|11846742 hsa-miR-30d-5p 0 0 1
chr16:11846514|11846742 hsa-miR-30d-3p 0 0 1
chr16:11846514|11846742 hsa-miR-212-5p 0 0 1
chr16:11846514|11846742 hsa-miR-212-3p 0 0 1
chr16:11846514|11846742 hsa-miR-15b-5p 0 0 1
chr16:11846514|11846742 hsa-miR-15b-3p 0 0 1
chr16:11846514|11846742 hsa-miR-30b-5p 0 0 1
chr16:11846514|11846742 hsa-miR-30b-3p 0 0 1
chr16:11846514|11846742 hsa-miR-132-5p 0 0 1
chr16:11846514|11846742 hsa-miR-132-3p 0 0 1
chr16:11846514|11846742 hsa-miR-195-5p 0 0 1
chr16:11846514|11846742 hsa-miR-195-3p 0 0 1
chr16:11846514|11846742 hsa-miR-30e-5p 0 0 1
chr16:11846514|11846742 hsa-miR-30e-3p 0 0 1
chr16:11846514|11846742 hsa-miR-335-5p 0 0 1
chr16:11846514|11846742 hsa-miR-335-3p 0 0 1
chr16:11846514|11846742 hsa-miR-422a 0 0 1
chr16:11846514|11846742 hsa-miR-424-5p 0 0 1
chr16:11846514|11846742 hsa-miR-424-3p 0 0 1
chr16:11846514|11846742 hsa-miR-497-5p 0 0 1
chr16:11846514|11846742 hsa-miR-497-3p 0 0 1
chr16:11846514|11846742 hsa-miR-503-5p 0 0 1
chr16:11846514|11846742 hsa-miR-503-3p 0 0 1
chr16:11846514|11846742 hsa-miR-586 0 0 1
chr16:11846514|11846742 hsa-miR-33b-5p 0 0 1
chr16:11846514|11846742 hsa-miR-33b-3p 0 0 1
chr16:11846514|11846742 hsa-miR-646 0 0 1
chr16:11846514|11846742 hsa-miR-943 0 0 1
chr16:11846514|11846742 hsa-miR-1237-5p 0 0 1
chr16:11846514|11846742 hsa-miR-1237-3p 0 0 1
chr16:11846514|11846742 hsa-miR-127-5p 0 0 1
chr16:11846514|11846742 hsa-miR-145-5p 0 0 1
chr16:11846514|11846742 hsa-miR-770-5p 0 0 1
chr16:11846514|11846742 hsa-miR-576-5p 0 0 1
chr16:11846514|11846742 hsa-miR-103 0 0 1
chr16:11846514|11846742 hsa-miR-16 0 0 1
chr16:11846514|11846742 hsa-miR-30c 0 0 1
chr16:11846514|11846742 hsa-miR-378 0 0 1
chr16:11846514|11846742 hsa-miR-4515 1 0 0
chr16:11846514|11846742 hsa-miR-4433a-3p 1 0 0
chr16:11846514|11846742 hsa-miR-574-5p 1 0 0
chr16:11846514|11846742 hsa-miR-6741-3p 1 0 0
chr16:11846514|11846742 hsa-miR-199b-5p 1 0 0
chr16:11846514|11846742 hsa-miR-5001-5p 1 0 0
chr16:11846514|11846742 hsa-miR-4524a-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:11846514|11846742
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MINSWTEGLQILELYKINTQAFRTQCIHT
Nucleotide Sequence TTGATAAATTCTTGGACAGAAGGTTTACAGATACTGGAACTCTACAAAATAAACACACAGGCATTCAGAACACAATGCATACACACCTAG
CircID chr16:11846514|11846742
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MFKTVPPIQSLISLDKFLDRRFTDTGTLQNKHTGIQNTMHTHLEASCC
Nucleotide Sequence ATGTTTAAGACTGTTCCACCTATACAGTCATTGATCTCTCTTGATAAATTCTTGGACAGAAGGTTTACAGATACTGGAACTCTACAAAATAAACACACAGGCATTCAGAACACAATGCATACACACCTAGAAGCTTCATGCTGCTAA
CircID chr16:11846514|11846742
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MPVCLFCRVPVSVNLLSKNLSREINDCIGGTVLNISK
Nucleotide Sequence ATGCCTGTGTGTTTATTTTGTAGAGTTCCAGTATCTGTAAACCTTCTGTCCAAGAATTTATCAAGAGAGATCAATGACTGTATAGGTGGAACAGTCTTAAACATTTCTAAA
CircID chr16:11846514|11846742
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MDFSSMKLLGVYALCSECLCVYFVEFQYL
Nucleotide Sequence CTGGACTTTAGCAGCATGAAGCTTCTAGGTGTGTATGCATTGTGTTCTGAATGCCTGTGTGTTTATTTTGTAGAGTTCCAGTATCTGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab