CircRNA Information

General Information
circRNA Basic Information
CircID chr16:1357129|1357351
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTGGGGTGCTGGCCCGGCCTGGCCTTCTGTTCCCTGACATTCCACTCACCCCTGGGGCTGTCCCCTCCCAAGACAGATGGAGACCAAGATGGCCAGGCTGCCCTGCTCAGGGGACAGGGGCTGTGGATATAGAAAGGTCCTGGTCCTTCCTTGTCAAATACCATCTGGGTGGCCCCTACTCCCAGGCTCACCCACTGTCCTCCCAGCCTGACCGCTGGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:1357129|1357351 hsa-miR-136-5p 0 0 1
chr16:1357129|1357351 hsa-miR-136-3p 0 0 1
chr16:1357129|1357351 hsa-miR-206 0 1 1
chr16:1357129|1357351 hsa-miR-431-5p 0 0 1
chr16:1357129|1357351 hsa-miR-431-3p 0 0 1
chr16:1357129|1357351 hsa-miR-484 0 0 1
chr16:1357129|1357351 hsa-miR-613 0 0 1
chr16:1357129|1357351 hsa-miR-635 0 0 1
chr16:1357129|1357351 hsa-miR-661 0 1 1
chr16:1357129|1357351 hsa-miR-1262 0 1 1
chr16:1357129|1357351 hsa-miR-339-5p 0 1 1
chr16:1357129|1357351 hsa-miR-361-3p 0 1 1
chr16:1357129|1357351 hsa-miR-331-3p 0 0 1
chr16:1357129|1357351 hsa-miR-125a-5p 0 0 1
chr16:1357129|1357351 hsa-miR-125b 0 0 1
chr16:1357129|1357351 hsa-miR-1 0 0 1
chr16:1357129|1357351 hsa-miR-514 0 0 1
chr16:1357129|1357351 hsa-miR-608 1 0 0
chr16:1357129|1357351 hsa-miR-612 0 1 0
chr16:1357129|1357351 hsa-miR-638 1 0 0
chr16:1357129|1357351 hsa-miR-762 1 0 0
chr16:1357129|1357351 hsa-miR-1538 1 0 0
chr16:1357129|1357351 hsa-miR-4319 0 1 0
chr16:1357129|1357351 hsa-miR-1268b 1 0 0
chr16:1357129|1357351 hsa-miR-4476 0 1 0
chr16:1357129|1357351 hsa-miR-4498 1 1 0
chr16:1357129|1357351 hsa-miR-4505 0 1 0
chr16:1357129|1357351 hsa-miR-4651 1 0 0
chr16:1357129|1357351 hsa-miR-4656 1 0 0
chr16:1357129|1357351 hsa-miR-4706 1 0 0
chr16:1357129|1357351 hsa-miR-4739 1 0 0
chr16:1357129|1357351 hsa-miR-4741 1 0 0
chr16:1357129|1357351 hsa-miR-5192 1 0 0
chr16:1357129|1357351 hsa-miR-6086 1 0 0
chr16:1357129|1357351 hsa-miR-6860 0 1 0
chr16:1357129|1357351 hsa-miR-12115 1 0 0
chr16:1357129|1357351 hsa-miR-6840-3p 1 0 0
chr16:1357129|1357351 hsa-miR-6747-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6809-5p 1 1 0
chr16:1357129|1357351 hsa-miR-671-5p 1 0 0
chr16:1357129|1357351 hsa-miR-7106-5p 0 1 0
chr16:1357129|1357351 hsa-miR-6894-5p 0 1 0
chr16:1357129|1357351 hsa-miR-1972 1 0 0
chr16:1357129|1357351 hsa-miR-210-5p 0 1 0
chr16:1357129|1357351 hsa-miR-6728-5p 1 1 0
chr16:1357129|1357351 hsa-miR-5187-5p 1 0 0
chr16:1357129|1357351 hsa-miR-3192-5p 0 1 0
chr16:1357129|1357351 hsa-miR-4695-5p 0 1 0
chr16:1357129|1357351 hsa-miR-7154-3p 0 1 0
chr16:1357129|1357351 hsa-miR-6762-3p 1 0 0
chr16:1357129|1357351 hsa-miR-6748-5p 0 1 0
chr16:1357129|1357351 hsa-miR-6793-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6732-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6805-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6798-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6881-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6782-5p 1 1 0
chr16:1357129|1357351 hsa-miR-30b-3p 0 1 0
chr16:1357129|1357351 hsa-miR-6786-5p 1 0 0
chr16:1357129|1357351 hsa-miR-4640-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6753-5p 1 0 0
chr16:1357129|1357351 hsa-miR-3127-5p 1 0 0
chr16:1357129|1357351 hsa-miR-1228-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6771-5p 1 0 0
chr16:1357129|1357351 hsa-miR-92b-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6749-5p 1 0 0
chr16:1357129|1357351 hsa-miR-659-5p 0 1 0
chr16:1357129|1357351 hsa-miR-4787-5p 1 0 0
chr16:1357129|1357351 hsa-miR-4446-3p 1 0 0
chr16:1357129|1357351 hsa-miR-149-3p 1 1 0
chr16:1357129|1357351 hsa-miR-6830-5p 0 1 0
chr16:1357129|1357351 hsa-miR-6824-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6789-5p 1 1 0
chr16:1357129|1357351 hsa-miR-6769a-3p 0 1 0
chr16:1357129|1357351 hsa-miR-4776-5p 1 0 0
chr16:1357129|1357351 hsa-miR-7112-5p 1 0 0
chr16:1357129|1357351 hsa-miR-3190-5p 0 1 0
chr16:1357129|1357351 hsa-miR-4707-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6814-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6856-3p 0 1 0
chr16:1357129|1357351 hsa-miR-6816-3p 0 1 0
chr16:1357129|1357351 hsa-miR-6503-3p 1 0 0
chr16:1357129|1357351 hsa-miR-1207-5p 1 0 0
chr16:1357129|1357351 hsa-miR-1273h-5p 0 1 0
chr16:1357129|1357351 hsa-miR-4763-3p 1 0 0
chr16:1357129|1357351 hsa-miR-6769b-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6778-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6812-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6816-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6775-5p 1 0 0
chr16:1357129|1357351 hsa-miR-5001-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6737-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6743-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6752-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6756-5p 1 1 0
chr16:1357129|1357351 hsa-miR-6803-5p 1 0 0
chr16:1357129|1357351 hsa-miR-7107-5p 1 0 0
chr16:1357129|1357351 hsa-miR-7110-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6722-3p 1 0 0
chr16:1357129|1357351 hsa-miR-6779-5p 1 1 0
chr16:1357129|1357351 hsa-miR-6780a-5p 1 1 0
chr16:1357129|1357351 hsa-miR-6797-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6808-5p 1 0 0
chr16:1357129|1357351 hsa-miR-4728-5p 1 1 0
chr16:1357129|1357351 hsa-miR-5196-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6836-5p 0 1 0
chr16:1357129|1357351 hsa-miR-328-5p 1 0 0
chr16:1357129|1357351 hsa-miR-3689a-3p 0 1 0
chr16:1357129|1357351 hsa-miR-4632-5p 1 1 0
chr16:1357129|1357351 hsa-miR-4685-5p 1 0 0
chr16:1357129|1357351 hsa-miR-4701-3p 0 1 0
chr16:1357129|1357351 hsa-miR-4725-3p 1 0 0
chr16:1357129|1357351 hsa-miR-4726-5p 0 1 0
chr16:1357129|1357351 hsa-miR-4745-5p 1 1 0
chr16:1357129|1357351 hsa-miR-4749-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6738-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6794-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6795-5p 1 1 0
chr16:1357129|1357351 hsa-miR-6846-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6887-5p 0 1 0
chr16:1357129|1357351 hsa-miR-3199 1 0 0
chr16:1357129|1357351 hsa-miR-4758-5p 1 1 0
chr16:1357129|1357351 hsa-miR-1266-5p 1 0 0
chr16:1357129|1357351 hsa-miR-7843-5p 0 1 0
chr16:1357129|1357351 hsa-miR-6876-5p 0 1 0
chr16:1357129|1357351 hsa-miR-6750-5p 1 1 0
chr16:1357129|1357351 hsa-miR-6785-5p 0 1 0
chr16:1357129|1357351 hsa-miR-6791-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6837-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6819-3p 0 1 0
chr16:1357129|1357351 hsa-miR-6764-5p 1 0 0
chr16:1357129|1357351 hsa-miR-6843-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:1357129|1357351
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence METKMARLPCSGDRGCGYRKVLVLPCQIPSGWPLLPGSPTVLPA
Nucleotide Sequence ATGGAGACCAAGATGGCCAGGCTGCCCTGCTCAGGGGACAGGGGCTGTGGATATAGAAAGGTCCTGGTCCTTCCTTGTCAAATACCATCTGGGTGGCCCCTACTCCCAGGCTCACCCACTGTCCTCCCAGCCTGA
CircID chr16:1357129|1357351
ORF Type ORF2
Protein Length 71
Nucleotide Length 213
Protein Sequence MARPGLLFPDIPLTPGAVPSQDRWRPRWPGCPAQGTGAVDIERSWSFLVKYHLGGPYSQAHPLSSQPDRWG
Nucleotide Sequence CTGGCCCGGCCTGGCCTTCTGTTCCCTGACATTCCACTCACCCCTGGGGCTGTCCCCTCCCAAGACAGATGGAGACCAAGATGGCCAGGCTGCCCTGCTCAGGGGACAGGGGCTGTGGATATAGAAAGGTCCTGGTCCTTCCTTGTCAAATACCATCTGGGTGGCCCCTACTCCCAGGCTCACCCACTGTCCTCCCAGCCTGACCGCTGGGGG
CircID chr16:1357129|1357351
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence LGCWPGLAFCSLTFHSPLGLSPPKTDGDQDGQAALLRGQGLWI
Nucleotide Sequence CTGGGGTGCTGGCCCGGCCTGGCCTTCTGTTCCCTGACATTCCACTCACCCCTGGGGCTGTCCCCTCCCAAGACAGATGGAGACCAAGATGGCCAGGCTGCCCTGCTCAGGGGACAGGGGCTGTGGATATAG
CircID chr16:1357129|1357351
ORF Type ORF4
Protein Length 69
Nucleotide Length 207
Protein Sequence MGGQWVSLGVGATQMVFDKEGPGPFYIHSPCPLSRAAWPSWSPSVLGGDSPRGEWNVREQKARPGQHPR
Nucleotide Sequence CTGGGAGGACAGTGGGTGAGCCTGGGAGTAGGGGCCACCCAGATGGTATTTGACAAGGAAGGACCAGGACCTTTCTATATCCACAGCCCCTGTCCCCTGAGCAGGGCAGCCTGGCCATCTTGGTCTCCATCTGTCTTGGGAGGGGACAGCCCCAGGGGTGAGTGGAATGTCAGGGAACAGAAGGCCAGGCCGGGCCAGCACCCCAGA
CircID chr16:1357129|1357351
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MSWEGTAPGVSGMSGNRRPGRASTPE
Nucleotide Sequence CTGTCTTGGGAGGGGACAGCCCCAGGGGTGAGTGGAATGTCAGGGAACAGAAGGCCAGGCCGGGCCAGCACCCCAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab