CircRNA Information

General Information
circRNA Basic Information
CircID chr16:1698835|1699086
Strand +
CircType exon
Host Gene ENSG00000206053.11;
Algorism CIRI2;
Sequence CCCGCTCATTTGGGCAAAAGGAAATGAAAACATGGCTACCCTATCTCTTGAGTTTCTGGTCTGGCTCCGGGTGGAGCAGTGGCTTCTCTTAGTAGAAGGAGATGCTGGATTTGCCTCCCGGTGGGTTCAGGACCTTGTTGTGAGAGCGAGGCCGCGGCCCCAGCCGGGGCTCATGGCTGTCGACTGTGGGCATGGGCTCCTGCTCCTTGGCGGGGCCTGCTTTTCTGGCGCTGCCTTTCTCACCTGGCTCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:1698835|1699086 hsa-miR-335-5p 0 0 1
chr16:1698835|1699086 hsa-miR-335-3p 0 0 1
chr16:1698835|1699086 hsa-miR-539-5p 0 0 1
chr16:1698835|1699086 hsa-miR-539-3p 0 0 1
chr16:1698835|1699086 hsa-miR-579-5p 0 0 1
chr16:1698835|1699086 hsa-miR-579-3p 0 0 1
chr16:1698835|1699086 hsa-miR-624-5p 0 0 1
chr16:1698835|1699086 hsa-miR-624-3p 0 0 1
chr16:1698835|1699086 hsa-miR-650 0 0 1
chr16:1698835|1699086 hsa-miR-1237-5p 0 0 1
chr16:1698835|1699086 hsa-miR-1237-3p 0 0 1
chr16:1698835|1699086 hsa-miR-1203 1 1 1
chr16:1698835|1699086 hsa-miR-1248 0 0 1
chr16:1698835|1699086 hsa-miR-125a-3p 1 0 1
chr16:1698835|1699086 hsa-miR-1225-3p 0 1 1
chr16:1698835|1699086 hsa-miR-885-3p 0 0 1
chr16:1698835|1699086 hsa-miR-338-3p 0 0 1
chr16:1698835|1699086 hsa-miR-342-3p 0 0 1
chr16:1698835|1699086 hsa-miR-1280 0 0 1
chr16:1698835|1699086 hsa-miR-1233 0 0 1
chr16:1698835|1699086 hsa-miR-762 1 1 0
chr16:1698835|1699086 hsa-miR-4306 1 0 0
chr16:1698835|1699086 hsa-miR-4254 0 1 0
chr16:1698835|1699086 hsa-miR-4641 0 1 0
chr16:1698835|1699086 hsa-miR-5787 0 1 0
chr16:1698835|1699086 hsa-miR-6081 0 1 0
chr16:1698835|1699086 hsa-miR-128-1-5p 0 1 0
chr16:1698835|1699086 hsa-miR-4722-5p 0 1 0
chr16:1698835|1699086 hsa-miR-4755-3p 1 0 0
chr16:1698835|1699086 hsa-miR-7845-5p 1 0 0
chr16:1698835|1699086 hsa-miR-3190-3p 1 0 0
chr16:1698835|1699086 hsa-miR-185-5p 1 1 0
chr16:1698835|1699086 hsa-miR-4786-3p 0 1 0
chr16:1698835|1699086 hsa-miR-4640-5p 1 0 0
chr16:1698835|1699086 hsa-miR-3690 0 1 0
chr16:1698835|1699086 hsa-miR-6824-5p 1 0 0
chr16:1698835|1699086 hsa-miR-6800-5p 1 0 0
chr16:1698835|1699086 hsa-miR-4707-5p 0 1 0
chr16:1698835|1699086 hsa-miR-6872-3p 1 1 0
chr16:1698835|1699086 hsa-miR-181d-3p 0 1 0
chr16:1698835|1699086 hsa-miR-196b-3p 0 1 0
chr16:1698835|1699086 hsa-miR-132-3p 0 1 0
chr16:1698835|1699086 hsa-miR-6893-5p 1 0 0
chr16:1698835|1699086 hsa-miR-6797-5p 1 0 0
chr16:1698835|1699086 hsa-miR-1909-3p 1 1 0
chr16:1698835|1699086 hsa-miR-4649-5p 1 0 0
chr16:1698835|1699086 hsa-miR-4726-5p 1 0 0
chr16:1698835|1699086 hsa-miR-4723-5p 1 0 0
chr16:1698835|1699086 hsa-miR-6845-5p 1 1 0
chr16:1698835|1699086 hsa-miR-324-3p 0 1 0
chr16:1698835|1699086 hsa-miR-10398-3p 0 1 0
chr16:1698835|1699086 hsa-miR-4676-5p 1 0 0
chr16:1698835|1699086 hsa-miR-9902 0 1 0
chr16:1698835|1699086 hsa-miR-6508-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:1698835|1699086
ORF Type ORF1
Protein Length 64
Nucleotide Length 192
Protein Sequence MAPGGAVASLSRRRCWICLPVGSGPCCESEAAAPAGAHGCRLWAWAPAPWRGLLFWRCLSHLAL
Nucleotide Sequence CTGGCTCCGGGTGGAGCAGTGGCTTCTCTTAGTAGAAGGAGATGCTGGATTTGCCTCCCGGTGGGTTCAGGACCTTGTTGTGAGAGCGAGGCCGCGGCCCCAGCCGGGGCTCATGGCTGTCGACTGTGGGCATGGGCTCCTGCTCCTTGGCGGGGCCTGCTTTTCTGGCGCTGCCTTTCTCACCTGGCTCTG
CircID chr16:1698835|1699086
ORF Type ORF2
Protein Length 73
Nucleotide Length 219
Protein Sequence MATLSLEFLVWLRVEQWLLLVEGDAGFASRWVQDLVVRARPRPQPGLMAVDCGHGLLLLGGACFSGAAFLTWL
Nucleotide Sequence ATGGCTACCCTATCTCTTGAGTTTCTGGTCTGGCTCCGGGTGGAGCAGTGGCTTCTCTTAGTAGAAGGAGATGCTGGATTTGCCTCCCGGTGGGTTCAGGACCTTGTTGTGAGAGCGAGGCCGCGGCCCCAGCCGGGGCTCATGGCTGTCGACTGTGGGCATGGGCTCCTGCTCCTTGGCGGGGCCTGCTTTTCTGGCGCTGCCTTTCTCACCTGGCTC
CircID chr16:1698835|1699086
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MSTVGMGSCSLAGPAFLALPFSPGS
Nucleotide Sequence CTGTCGACTGTGGGCATGGGCTCCTGCTCCTTGGCGGGGCCTGCTTTTCTGGCGCTGCCTTTCTCACCTGGCTCT
CircID chr16:1698835|1699086
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MPTVDSHEPRLGPRPRSHNKVLNPPGGKSSISFY
Nucleotide Sequence ATGCCCACAGTCGACAGCCATGAGCCCCGGCTGGGGCCGCGGCCTCGCTCTCACAACAAGGTCCTGAACCCACCGGGAGGCAAATCCAGCATCTCCTTCTACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab