CircRNA Information

General Information
circRNA Basic Information
CircID chr16:1777101|1777231
Strand +
CircType exon
Host Gene ENSG00000197774.11;
Algorism CIRI2;
Sequence AAGCTGGGCTGGGTCCTGAGCATGAGTTGCAGCCGCCGCAAGGCTCCAGTGTCCGATCCCCAGGCAGCGACCTCCGCCCACCCCAGCAGTCGCGAGCCTCGGCCCTGCCAGAGGAAGCGCTGCCGCCGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:1777101|1777231 hsa-miR-608 1 1 1
chr16:1777101|1777231 hsa-miR-638 1 1 1
chr16:1777101|1777231 hsa-miR-639 1 0 1
chr16:1777101|1777231 hsa-miR-661 0 1 1
chr16:1777101|1777231 hsa-miR-658 0 0 1
chr16:1777101|1777231 hsa-miR-891b 0 0 1
chr16:1777101|1777231 hsa-miR-541-5p 0 0 1
chr16:1777101|1777231 hsa-miR-541-3p 0 0 1
chr16:1777101|1777231 hsa-miR-885-3p 0 0 1
chr16:1777101|1777231 hsa-miR-654-5p 0 0 1
chr16:1777101|1777231 hsa-miR-1207-5p 1 1 1
chr16:1777101|1777231 hsa-miR-342-5p 0 0 1
chr16:1777101|1777231 hsa-miR-516a-3p 0 1 1
chr16:1777101|1777231 hsa-miR-1254 0 0 1
chr16:1777101|1777231 hsa-miR-637 1 0 0
chr16:1777101|1777231 hsa-miR-663a 1 0 0
chr16:1777101|1777231 hsa-miR-940 1 0 0
chr16:1777101|1777231 hsa-miR-1538 1 0 0
chr16:1777101|1777231 hsa-miR-2861 1 0 0
chr16:1777101|1777231 hsa-miR-3135a 1 0 0
chr16:1777101|1777231 hsa-miR-3918 0 1 0
chr16:1777101|1777231 hsa-miR-4450 1 0 0
chr16:1777101|1777231 hsa-miR-3960 1 1 0
chr16:1777101|1777231 hsa-miR-4651 1 1 0
chr16:1777101|1777231 hsa-miR-4656 1 0 0
chr16:1777101|1777231 hsa-miR-5685 0 1 0
chr16:1777101|1777231 hsa-miR-5787 1 0 0
chr16:1777101|1777231 hsa-miR-6132 1 1 0
chr16:1777101|1777231 hsa-miR-7150 0 1 0
chr16:1777101|1777231 hsa-miR-8089 1 1 0
chr16:1777101|1777231 hsa-miR-1843 1 0 0
chr16:1777101|1777231 hsa-miR-370-3p 1 1 0
chr16:1777101|1777231 hsa-miR-6857-5p 0 1 0
chr16:1777101|1777231 hsa-miR-3692-5p 0 1 0
chr16:1777101|1777231 hsa-miR-7160-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6820-5p 0 1 0
chr16:1777101|1777231 hsa-miR-6721-5p 1 0 0
chr16:1777101|1777231 hsa-miR-3180-3p 1 0 0
chr16:1777101|1777231 hsa-miR-6772-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6782-5p 1 0 0
chr16:1777101|1777231 hsa-miR-3934-3p 0 1 0
chr16:1777101|1777231 hsa-miR-6852-5p 0 1 0
chr16:1777101|1777231 hsa-miR-6784-5p 1 0 0
chr16:1777101|1777231 hsa-miR-4640-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6757-3p 0 1 0
chr16:1777101|1777231 hsa-miR-1228-5p 1 1 0
chr16:1777101|1777231 hsa-miR-6501-5p 1 0 0
chr16:1777101|1777231 hsa-miR-4787-5p 1 0 0
chr16:1777101|1777231 hsa-miR-4446-3p 1 0 0
chr16:1777101|1777231 hsa-miR-6781-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6877-5p 1 1 0
chr16:1777101|1777231 hsa-miR-4772-3p 0 1 0
chr16:1777101|1777231 hsa-miR-744-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6770-3p 0 1 0
chr16:1777101|1777231 hsa-miR-10400-5p 1 0 0
chr16:1777101|1777231 hsa-miR-4763-3p 1 1 0
chr16:1777101|1777231 hsa-miR-6769b-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6787-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6812-5p 1 1 0
chr16:1777101|1777231 hsa-miR-6816-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6737-5p 1 1 0
chr16:1777101|1777231 hsa-miR-6756-5p 1 1 0
chr16:1777101|1777231 hsa-miR-6803-5p 1 1 0
chr16:1777101|1777231 hsa-miR-6851-5p 1 0 0
chr16:1777101|1777231 hsa-miR-7107-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6722-3p 1 0 0
chr16:1777101|1777231 hsa-miR-6751-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6836-5p 1 1 0
chr16:1777101|1777231 hsa-miR-10396a-5p 1 0 0
chr16:1777101|1777231 hsa-miR-10396b-5p 1 0 0
chr16:1777101|1777231 hsa-miR-4649-5p 1 0 0
chr16:1777101|1777231 hsa-miR-4685-5p 1 0 0
chr16:1777101|1777231 hsa-miR-6729-5p 1 0 0
chr16:1777101|1777231 hsa-miR-4700-5p 1 1 0
chr16:1777101|1777231 hsa-miR-6766-5p 0 1 0
chr16:1777101|1777231 hsa-miR-4667-5p 0 1 0
chr16:1777101|1777231 hsa-miR-6791-5p 1 0 0
chr16:1777101|1777231 hsa-miR-520f-3p 0 1 0
chr16:1777101|1777231 hsa-miR-4690-3p 0 1 0
chr16:1777101|1777231 hsa-miR-7162-5p 0 1 0
chr16:1777101|1777231 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:1777101|1777231
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MGWVLSMSCSRRKAPVSDPQAATSAHPSSREPRPCQRKRCRR
Nucleotide Sequence CTGGGCTGGGTCCTGAGCATGAGTTGCAGCCGCCGCAAGGCTCCAGTGTCCGATCCCCAGGCAGCGACCTCCGCCCACCCCAGCAGTCGCGAGCCTCGGCCCTGCCAGAGGAAGCGCTGCCGCCGG
CircID chr16:1777101|1777231
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MGPEHELQPPQGSSVRSPGSDLRPPQQSRASALPEEALPPD
Nucleotide Sequence CTGGGTCCTGAGCATGAGTTGCAGCCGCCGCAAGGCTCCAGTGTCCGATCCCCAGGCAGCGACCTCCGCCCACCCCAGCAGTCGCGAGCCTCGGCCCTGCCAGAGGAAGCGCTGCCGCCGGAC
CircID chr16:1777101|1777231
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MLGWAEVAAWGSDTGALRRLQLMLRTQPS
Nucleotide Sequence CTGCTGGGGTGGGCGGAGGTCGCTGCCTGGGGATCGGACACTGGAGCCTTGCGGCGGCTGCAACTCATGCTCAGGACCCAGCCCAGC
CircID chr16:1777101|1777231
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MAGPRLATAGVGGGRCLGIGHWSLAAAATHAQDPAQL
Nucleotide Sequence CTGGCAGGGCCGAGGCTCGCGACTGCTGGGGTGGGCGGAGGTCGCTGCCTGGGGATCGGACACTGGAGCCTTGCGGCGGCTGCAACTCATGCTCAGGACCCAGCCCAGCTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab