CircRNA Information

General Information
circRNA Basic Information
CircID chr16:18788981|18789118
Strand -
CircType exon
Host Gene ENSG00000134419.14;
Algorism CIRI2;
Sequence CATGCTTCATCATCACAGTGAGAAACCGGACGATGACTTTGGAGCACGGCCTAATAAGCACCTGGCGTTTGCCTCTCTTTTCGGCATTGTTGATACTCTTGAGAGCATCTGCCAGGACATTCATGCGCACCATTGTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:18788981|18789118 hsa-miR-335-5p 0 0 1
chr16:18788981|18789118 hsa-miR-335-3p 0 0 1
chr16:18788981|18789118 hsa-miR-675-5p 0 0 1
chr16:18788981|18789118 hsa-miR-675-3p 0 0 1
chr16:18788981|18789118 hsa-miR-933 0 1 1
chr16:18788981|18789118 hsa-miR-1229-5p 0 0 1
chr16:18788981|18789118 hsa-miR-1229-3p 0 0 1
chr16:18788981|18789118 hsa-miR-1208 0 0 1
chr16:18788981|18789118 hsa-miR-1272 0 0 1
chr16:18788981|18789118 hsa-miR-513c-5p 0 0 1
chr16:18788981|18789118 hsa-miR-513c-3p 0 0 1
chr16:18788981|18789118 hsa-miR-671-3p 0 0 1
chr16:18788981|18789118 hsa-miR-768-3p 0 0 1
chr16:18788981|18789118 hsa-miR-1295 0 0 1
chr16:18788981|18789118 hsa-miR-3974 0 1 0
chr16:18788981|18789118 hsa-miR-29b-1-5p 0 1 0
chr16:18788981|18789118 hsa-miR-519d-5p 0 1 0
chr16:18788981|18789118 hsa-miR-6868-5p 0 1 0
chr16:18788981|18789118 hsa-miR-490-5p 0 1 0
chr16:18788981|18789118 hsa-miR-3664-3p 0 1 0
chr16:18788981|18789118 hsa-miR-548at-5p 0 1 0
chr16:18788981|18789118 hsa-miR-6758-5p 0 1 0
chr16:18788981|18789118 hsa-miR-6856-5p 0 1 0
chr16:18788981|18789118 hsa-miR-5008-3p 0 1 0
chr16:18788981|18789118 hsa-miR-514b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:18788981|18789118
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MLHHHSEKPDDDFGARPNKHLAFASLFGIVDTLESICQDIHAHHC
Nucleotide Sequence ATGCTTCATCATCACAGTGAGAAACCGGACGATGACTTTGGAGCACGGCCTAATAAGCACCTGGCGTTTGCCTCTCTTTTCGGCATTGTTGATACTCTTGAGAGCATCTGCCAGGACATTCATGCGCACCATTGT
CircID chr16:18788981|18789118
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MTLEHGLISTWRLPLFSALLILLRASARTFMRTIV
Nucleotide Sequence ATGACTTTGGAGCACGGCCTAATAAGCACCTGGCGTTTGCCTCTCTTTTCGGCATTGTTGATACTCTTGAGAGCATCTGCCAGGACATTCATGCGCACCATTGTG
CircID chr16:18788981|18789118
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MSWQMLSRVSTMPKREANARCLLGRAPKSSSGFSL
Nucleotide Sequence ATGTCCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAACGCCAGGTGCTTATTAGGCCGTGCTCCAAAGTCATCGTCCGGTTTCTCACTGTGA
CircID chr16:18788981|18789118
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKH
Nucleotide Sequence ATGGTGCGCATGAATGTCCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAACGCCAGGTGCTTATTAGGCCGTGCTCCAAAGTCATCGTCCGGTTTCTCACTGTGATGATGAAGCAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab