CircRNA Information

General Information
circRNA Basic Information
CircID chr16:18806808|18807141
Strand +
CircType exon
Host Gene ENSG00000157106.15;
Algorism CIRI2;
Sequence CTGGCACCTTACTCAAGCAAAAACAAAAAACAGCTTTACTTCAAAAGCATGTGCCTCTGGTAAATTATCCATCACTTTTGTTTTAAAGTGGTCCCTCCAAGAATAATGTGGCATACACAGTGGGTTTGGTTGTAAGGCAGATGTAATAGATGACTTCAAAAGCCTGCTCCTTACTGCACTCTGGACAAGGCCCTGGTCTGTATAGTTTGGCTTCCTCTGTTAAGTCATTCTACAAGGTGACTTGCCATTTGAACTTTCGTAAGAGACCTCAGCAGTTAGACTGAGAAAAGTTAGAGTGCTGTAGTTATGAAGTCATACATTTTTGATAAAATAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:18806808|18807141 hsa-miR-18a-5p 0 0 1
chr16:18806808|18807141 hsa-miR-18a-3p 0 0 1
chr16:18806808|18807141 hsa-miR-31-5p 0 0 1
chr16:18806808|18807141 hsa-miR-31-3p 0 0 1
chr16:18806808|18807141 hsa-miR-198 1 1 1
chr16:18806808|18807141 hsa-miR-224-5p 0 0 1
chr16:18806808|18807141 hsa-miR-224-3p 0 0 1
chr16:18806808|18807141 hsa-miR-320a-5p 0 0 1
chr16:18806808|18807141 hsa-miR-320a-3p 0 0 1
chr16:18806808|18807141 hsa-miR-18b-5p 0 0 1
chr16:18806808|18807141 hsa-miR-18b-3p 0 0 1
chr16:18806808|18807141 hsa-miR-432-5p 0 0 1
chr16:18806808|18807141 hsa-miR-432-3p 0 0 1
chr16:18806808|18807141 hsa-miR-573 0 0 1
chr16:18806808|18807141 hsa-miR-606 0 0 1
chr16:18806808|18807141 hsa-miR-607 0 0 1
chr16:18806808|18807141 hsa-miR-617 0 0 1
chr16:18806808|18807141 hsa-miR-622 0 0 1
chr16:18806808|18807141 hsa-miR-892a 0 0 1
chr16:18806808|18807141 hsa-miR-1261 0 0 1
chr16:18806808|18807141 hsa-miR-1284 1 1 1
chr16:18806808|18807141 hsa-miR-671-5p 0 1 1
chr16:18806808|18807141 hsa-miR-129-5p 0 0 1
chr16:18806808|18807141 hsa-miR-525-5p 0 0 1
chr16:18806808|18807141 hsa-miR-520a-5p 0 0 1
chr16:18806808|18807141 hsa-miR-320b 0 0 1
chr16:18806808|18807141 hsa-miR-320c 0 0 1
chr16:18806808|18807141 hsa-miR-320d 0 0 1
chr16:18806808|18807141 hsa-miR-105 0 0 1
chr16:18806808|18807141 hsa-miR-768-5p 0 0 1
chr16:18806808|18807141 hsa-miR-3125 0 1 0
chr16:18806808|18807141 hsa-miR-4280 0 1 0
chr16:18806808|18807141 hsa-miR-3609 0 1 0
chr16:18806808|18807141 hsa-miR-3918 1 0 0
chr16:18806808|18807141 hsa-miR-4739 1 0 0
chr16:18806808|18807141 hsa-miR-6081 1 0 0
chr16:18806808|18807141 hsa-miR-93-3p 0 1 0
chr16:18806808|18807141 hsa-miR-504-3p 1 0 0
chr16:18806808|18807141 hsa-miR-7160-5p 0 1 0
chr16:18806808|18807141 hsa-miR-6776-5p 1 0 0
chr16:18806808|18807141 hsa-miR-6827-5p 1 0 0
chr16:18806808|18807141 hsa-miR-6715b-3p 0 1 0
chr16:18806808|18807141 hsa-miR-5006-5p 1 0 0
chr16:18806808|18807141 hsa-miR-6784-5p 1 0 0
chr16:18806808|18807141 hsa-miR-6753-5p 1 0 0
chr16:18806808|18807141 hsa-miR-5001-3p 0 1 0
chr16:18806808|18807141 hsa-miR-2277-5p 1 0 0
chr16:18806808|18807141 hsa-let-7g-3p 1 1 0
chr16:18806808|18807141 hsa-miR-6775-5p 1 0 0
chr16:18806808|18807141 hsa-miR-6875-5p 1 1 0
chr16:18806808|18807141 hsa-miR-6836-5p 1 0 0
chr16:18806808|18807141 hsa-miR-4685-5p 1 1 0
chr16:18806808|18807141 hsa-miR-6795-5p 1 0 0
chr16:18806808|18807141 hsa-miR-6887-5p 1 0 0
chr16:18806808|18807141 hsa-miR-6837-5p 1 0 0
chr16:18806808|18807141 hsa-miR-6817-5p 1 0 0
chr16:18806808|18807141 hsa-miR-6764-5p 0 1 0
chr16:18806808|18807141 hsa-miR-548az-5p 0 1 0
chr16:18806808|18807141 hsa-let-7f-2-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:18806808|18807141
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MTSKACSLLHSGQGPGLYSLASSVKSFYKVTCHLNFRKRPQQLD
Nucleotide Sequence ATGACTTCAAAAGCCTGCTCCTTACTGCACTCTGGACAAGGCCCTGGTCTGTATAGTTTGGCTTCCTCTGTTAAGTCATTCTACAAGGTGACTTGCCATTTGAACTTTCGTAAGAGACCTCAGCAGTTAGACTGA
CircID chr16:18806808|18807141
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MKSSITSALQPNPLCMPHYSWRDHFKTKVMDNLPEAHAFEVKLFFVFA
Nucleotide Sequence TTGAAGTCATCTATTACATCTGCCTTACAACCAAACCCACTGTGTATGCCACATTATTCTTGGAGGGACCACTTTAAAACAAAAGTGATGGATAATTTACCAGAGGCACATGCTTTTGAAGTAAAGCTGTTTTTTGTTTTTGCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab