CircRNA Information

General Information
circRNA Basic Information
CircID chr16:18836124|18836432
Strand -
CircType exon
Host Gene ENSG00000157106.15;
Algorism CIRI2;
Sequence CTCCCCCTCCAGCTGCTCGCACTGGCTAATCAAGTGGGCCTGACCAGCATTCTGCAGAAAGGCTGTTGCTGGCACGTAACTTGGAGGACCTTTTGGTAAAAGACATTATTAAACACAGTAAAACAGGGTCAAGTCAGCTGTCACTAAAAGCAAGCACAAACCAGGACCCCACACAAACACACATGACTATAAAACTCATAGTTTCACATGTGAATCTAAAATAAGTCAACCCATACCAAGGTCCATTTGTGTGCTTATCTCTTGAAGCAAGCTTGCAAGCTGTGTTGCTTCTAAATTATTGAATGCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:18836124|18836432 hsa-miR-23a-5p 0 0 1
chr16:18836124|18836432 hsa-miR-23a-3p 0 0 1
chr16:18836124|18836432 hsa-miR-10a-5p 0 0 1
chr16:18836124|18836432 hsa-miR-10a-3p 0 0 1
chr16:18836124|18836432 hsa-miR-10b-5p 0 0 1
chr16:18836124|18836432 hsa-miR-10b-3p 0 0 1
chr16:18836124|18836432 hsa-miR-23b-5p 0 0 1
chr16:18836124|18836432 hsa-miR-23b-3p 0 0 1
chr16:18836124|18836432 hsa-miR-335-5p 0 0 1
chr16:18836124|18836432 hsa-miR-335-3p 0 0 1
chr16:18836124|18836432 hsa-miR-511-5p 0 0 1
chr16:18836124|18836432 hsa-miR-511-3p 0 0 1
chr16:18836124|18836432 hsa-miR-492 0 0 1
chr16:18836124|18836432 hsa-miR-504-5p 0 0 1
chr16:18836124|18836432 hsa-miR-504-3p 0 0 1
chr16:18836124|18836432 hsa-miR-563 0 0 1
chr16:18836124|18836432 hsa-miR-575 0 1 1
chr16:18836124|18836432 hsa-miR-599 0 0 1
chr16:18836124|18836432 hsa-miR-636 0 1 1
chr16:18836124|18836432 hsa-miR-646 0 0 1
chr16:18836124|18836432 hsa-miR-298 0 0 1
chr16:18836124|18836432 hsa-miR-892a 0 0 1
chr16:18836124|18836432 hsa-miR-921 0 0 1
chr16:18836124|18836432 hsa-miR-1202 0 1 1
chr16:18836124|18836432 hsa-miR-1205 0 0 1
chr16:18836124|18836432 hsa-miR-1825 0 0 1
chr16:18836124|18836432 hsa-miR-491-5p 0 0 1
chr16:18836124|18836432 hsa-miR-615-5p 0 0 1
chr16:18836124|18836432 hsa-miR-1184 0 0 1
chr16:18836124|18836432 hsa-miR-1207-3p 0 0 1
chr16:18836124|18836432 hsa-miR-542-3p 0 0 1
chr16:18836124|18836432 hsa-miR-1274b 0 0 1
chr16:18836124|18836432 hsa-miR-644 0 0 1
chr16:18836124|18836432 hsa-miR-138 0 0 1
chr16:18836124|18836432 hsa-miR-218 0 0 1
chr16:18836124|18836432 hsa-miR-544 0 0 1
chr16:18836124|18836432 hsa-miR-147 0 0 1
chr16:18836124|18836432 hsa-miR-621 0 1 0
chr16:18836124|18836432 hsa-miR-3911 1 0 0
chr16:18836124|18836432 hsa-miR-5087 1 1 0
chr16:18836124|18836432 hsa-miR-6131 0 1 0
chr16:18836124|18836432 hsa-miR-8070 1 0 0
chr16:18836124|18836432 hsa-miR-210-3p 1 0 0
chr16:18836124|18836432 hsa-miR-100-3p 0 1 0
chr16:18836124|18836432 hsa-miR-6796-5p 1 1 0
chr16:18836124|18836432 hsa-miR-6850-5p 1 1 0
chr16:18836124|18836432 hsa-miR-2681-5p 0 1 0
chr16:18836124|18836432 hsa-miR-6756-5p 1 0 0
chr16:18836124|18836432 hsa-miR-4745-5p 1 0 0
chr16:18836124|18836432 hsa-miR-4758-5p 1 0 0
chr16:18836124|18836432 hsa-miR-6855-5p 1 0 0
chr16:18836124|18836432 hsa-miR-4691-5p 0 1 0
chr16:18836124|18836432 hsa-miR-4676-5p 0 1 0
chr16:18836124|18836432 hsa-miR-376a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:18836124|18836432
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLALANQVGLTSILQKGCCWHVTWRTFW
Nucleotide Sequence CTGCTCGCACTGGCTAATCAAGTGGGCCTGACCAGCATTCTGCAGAAAGGCTGTTGCTGGCACGTAACTTGGAGGACCTTTTGGTAA
CircID chr16:18836124|18836432
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MLLARNLEDLLVKDIIKHSKTGSSQLSLKASTNQDPTQTHMTIKLIVSHVNLK
Nucleotide Sequence CTGTTGCTGGCACGTAACTTGGAGGACCTTTTGGTAAAAGACATTATTAAACACAGTAAAACAGGGTCAAGTCAGCTGTCACTAAAAGCAAGCACAAACCAGGACCCCACACAAACACACATGACTATAAAACTCATAGTTTCACATGTGAATCTAAAATAA
CircID chr16:18836124|18836432
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MTYFRFTCETMSFIVMCVCVGSWFVLAFSDS
Nucleotide Sequence TTGACTTATTTTAGATTCACATGTGAAACTATGAGTTTTATAGTCATGTGTGTTTGTGTGGGGTCCTGGTTTGTGCTTGCTTTTAGTGACAGCTGA
CircID chr16:18836124|18836432
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MCLIMSFTKRSSKLRASNSLSAECWSGPLD
Nucleotide Sequence CTGTGTTTAATAATGTCTTTTACCAAAAGGTCCTCCAAGTTACGTGCCAGCAACAGCCTTTCTGCAGAATGCTGGTCAGGCCCACTTGATTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab