CircRNA Information

General Information
circRNA Basic Information
CircID chr16:19120410|19120524
Strand -
CircType exon
Host Gene ENSG00000205730.6;
Algorism CIRI2;
Sequence CCCTGAATGTTTCTATCATTTTCTTTTCTTTTTTTTTTTTTTTCGAGACAGAGTTTTGCTCTTGTTTTACAGGCTGGGGTGCGGTGGGATGATCTTGGCTCACTGCAATCTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:19120410|19120524 hsa-miR-181c-5p 0 0 1
chr16:19120410|19120524 hsa-miR-181c-3p 0 0 1
chr16:19120410|19120524 hsa-miR-335-5p 0 0 1
chr16:19120410|19120524 hsa-miR-335-3p 0 0 1
chr16:19120410|19120524 hsa-miR-494-5p 0 0 1
chr16:19120410|19120524 hsa-miR-494-3p 0 0 1
chr16:19120410|19120524 hsa-miR-181d-5p 0 0 1
chr16:19120410|19120524 hsa-miR-181d-3p 0 0 1
chr16:19120410|19120524 hsa-miR-1323 0 0 1
chr16:19120410|19120524 hsa-miR-543 0 0 1
chr16:19120410|19120524 hsa-miR-548o-3p 0 0 1
chr16:19120410|19120524 hsa-miR-548p 0 0 1
chr16:19120410|19120524 hsa-miR-548o 0 0 1
chr16:19120410|19120524 hsa-miR-1224-3p 0 0 1
chr16:19120410|19120524 hsa-miR-1260 0 0 1
chr16:19120410|19120524 hsa-miR-1280 0 0 1
chr16:19120410|19120524 hsa-miR-181a 0 0 1
chr16:19120410|19120524 hsa-miR-181b 0 0 1
chr16:19120410|19120524 hsa-miR-4784 0 1 0
chr16:19120410|19120524 hsa-miR-6849-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:19120410|19120524
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MFLSFSFLFFFFSRQSFALVLQAGVRWDDLGSLQSP
Nucleotide Sequence ATGTTTCTATCATTTTCTTTTCTTTTTTTTTTTTTTTCGAGACAGAGTTTTGCTCTTGTTTTACAGGCTGGGGTGCGGTGGGATGATCTTGGCTCACTGCAATCTCCT
CircID chr16:19120410|19120524
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence LNVSIIFFSFFFFFETEFCSCFTGWGAVG
Nucleotide Sequence CTGAATGTTTCTATCATTTTCTTTTCTTTTTTTTTTTTTTTCGAGACAGAGTTTTGCTCTTGTTTTACAGGCTGGGGTGCGGTGGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab