CircRNA Information

General Information
circRNA Basic Information
CircID chr16:1977365|1977592
Strand +
CircType exon
Host Gene ENSG00000183751.13;
Algorism CIRI2;
Sequence CTTGTCCTCGTGGGCATCCAGCGTCCGCACACACTCGTTGTTCTTGATGGTCCAGAGCTTCACGAGGCCATCCGAACCGCTGGGTTTGGGGTGGGGAGAGGCTCAGCGTCAGGCAGGTCCCCCCGCCACCCCCCACTCCATCGCTGCCCCACCCCAGCCCACTCACCTGGACAGCAGCTGCGTGCCACGGCTCACAAAGGCCACCTTCAGCACAGAAGCATCGTGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:1977365|1977592 hsa-miR-198 0 0 1
chr16:1977365|1977592 hsa-miR-122-5p 0 0 1
chr16:1977365|1977592 hsa-miR-122-3p 0 0 1
chr16:1977365|1977592 hsa-miR-422a 0 0 1
chr16:1977365|1977592 hsa-miR-492 0 1 1
chr16:1977365|1977592 hsa-miR-493-5p 0 0 1
chr16:1977365|1977592 hsa-miR-493-3p 0 0 1
chr16:1977365|1977592 hsa-miR-564 0 0 1
chr16:1977365|1977592 hsa-miR-608 1 1 1
chr16:1977365|1977592 hsa-miR-611 0 0 1
chr16:1977365|1977592 hsa-miR-626 0 0 1
chr16:1977365|1977592 hsa-miR-758-5p 0 0 1
chr16:1977365|1977592 hsa-miR-758-3p 0 0 1
chr16:1977365|1977592 hsa-miR-147b-5p 0 0 1
chr16:1977365|1977592 hsa-miR-147b-3p 0 0 1
chr16:1977365|1977592 hsa-miR-1287-5p 0 0 1
chr16:1977365|1977592 hsa-miR-1287-3p 0 0 1
chr16:1977365|1977592 hsa-miR-127-5p 0 0 1
chr16:1977365|1977592 hsa-miR-125a-3p 1 1 1
chr16:1977365|1977592 hsa-miR-486-3p 0 0 1
chr16:1977365|1977592 hsa-miR-885-3p 0 1 1
chr16:1977365|1977592 hsa-miR-574-5p 0 1 1
chr16:1977365|1977592 hsa-miR-342-5p 0 0 1
chr16:1977365|1977592 hsa-miR-378 0 0 1
chr16:1977365|1977592 hsa-miR-1201 0 0 1
chr16:1977365|1977592 hsa-miR-663 0 0 1
chr16:1977365|1977592 hsa-miR-663a 1 1 0
chr16:1977365|1977592 hsa-miR-762 1 1 0
chr16:1977365|1977592 hsa-miR-760 1 0 0
chr16:1977365|1977592 hsa-miR-920 1 0 0
chr16:1977365|1977592 hsa-miR-1268a 1 0 0
chr16:1977365|1977592 hsa-miR-3147 1 0 0
chr16:1977365|1977592 hsa-miR-3196 1 0 0
chr16:1977365|1977592 hsa-miR-4322 1 0 0
chr16:1977365|1977592 hsa-miR-3649 0 1 0
chr16:1977365|1977592 hsa-miR-3659 1 0 0
chr16:1977365|1977592 hsa-miR-3665 1 0 0
chr16:1977365|1977592 hsa-miR-3937 1 0 0
chr16:1977365|1977592 hsa-miR-1268b 1 0 0
chr16:1977365|1977592 hsa-miR-4447 0 1 0
chr16:1977365|1977592 hsa-miR-4466 1 0 0
chr16:1977365|1977592 hsa-miR-4481 1 1 0
chr16:1977365|1977592 hsa-miR-4498 1 1 0
chr16:1977365|1977592 hsa-miR-4505 1 1 0
chr16:1977365|1977592 hsa-miR-4507 1 1 0
chr16:1977365|1977592 hsa-miR-4525 1 0 0
chr16:1977365|1977592 hsa-miR-4534 0 1 0
chr16:1977365|1977592 hsa-miR-1587 1 1 0
chr16:1977365|1977592 hsa-miR-3960 1 0 0
chr16:1977365|1977592 hsa-miR-4651 1 1 0
chr16:1977365|1977592 hsa-miR-4656 1 0 0
chr16:1977365|1977592 hsa-miR-4688 1 0 0
chr16:1977365|1977592 hsa-miR-4706 1 0 0
chr16:1977365|1977592 hsa-miR-4730 1 0 0
chr16:1977365|1977592 hsa-miR-4741 1 0 0
chr16:1977365|1977592 hsa-miR-4754 0 1 0
chr16:1977365|1977592 hsa-miR-4767 1 0 0
chr16:1977365|1977592 hsa-miR-5047 1 0 0
chr16:1977365|1977592 hsa-miR-5090 1 0 0
chr16:1977365|1977592 hsa-miR-5572 1 0 0
chr16:1977365|1977592 hsa-miR-5787 1 1 0
chr16:1977365|1977592 hsa-miR-6090 1 0 0
chr16:1977365|1977592 hsa-miR-6127 1 0 0
chr16:1977365|1977592 hsa-miR-8082 0 1 0
chr16:1977365|1977592 hsa-miR-4433b-3p 1 1 0
chr16:1977365|1977592 hsa-miR-132-5p 0 1 0
chr16:1977365|1977592 hsa-miR-4731-5p 1 0 0
chr16:1977365|1977592 hsa-miR-31-5p 1 0 0
chr16:1977365|1977592 hsa-miR-323a-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6747-3p 0 1 0
chr16:1977365|1977592 hsa-miR-3692-5p 1 0 0
chr16:1977365|1977592 hsa-miR-8071 1 0 0
chr16:1977365|1977592 hsa-miR-7114-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6867-5p 0 1 0
chr16:1977365|1977592 hsa-miR-1301-3p 1 0 0
chr16:1977365|1977592 hsa-miR-197-5p 1 0 0
chr16:1977365|1977592 hsa-miR-4728-3p 0 1 0
chr16:1977365|1977592 hsa-miR-6742-5p 1 0 0
chr16:1977365|1977592 hsa-miR-3151-5p 0 1 0
chr16:1977365|1977592 hsa-miR-6793-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6732-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6782-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6514-5p 0 1 0
chr16:1977365|1977592 hsa-miR-7855-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6850-5p 1 0 0
chr16:1977365|1977592 hsa-miR-3934-3p 1 0 0
chr16:1977365|1977592 hsa-miR-6786-5p 1 0 0
chr16:1977365|1977592 hsa-miR-7109-5p 1 0 0
chr16:1977365|1977592 hsa-miR-1229-5p 1 0 0
chr16:1977365|1977592 hsa-miR-296-3p 1 0 0
chr16:1977365|1977592 hsa-miR-3677-3p 1 0 0
chr16:1977365|1977592 hsa-miR-4787-5p 1 1 0
chr16:1977365|1977592 hsa-miR-4446-3p 1 0 0
chr16:1977365|1977592 hsa-miR-4776-5p 0 1 0
chr16:1977365|1977592 hsa-miR-6869-5p 1 0 0
chr16:1977365|1977592 hsa-miR-1250-5p 1 1 0
chr16:1977365|1977592 hsa-miR-629-3p 0 1 0
chr16:1977365|1977592 hsa-miR-891a-3p 0 1 0
chr16:1977365|1977592 hsa-miR-6857-3p 0 1 0
chr16:1977365|1977592 hsa-miR-10400-5p 1 0 0
chr16:1977365|1977592 hsa-miR-4763-3p 1 0 0
chr16:1977365|1977592 hsa-miR-6769b-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6787-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6812-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6816-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6865-5p 0 1 0
chr16:1977365|1977592 hsa-miR-5001-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6737-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6743-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6752-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6756-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6803-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6819-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6842-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6851-5p 1 0 0
chr16:1977365|1977592 hsa-miR-7110-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6751-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6763-5p 1 0 0
chr16:1977365|1977592 hsa-miR-7111-5p 1 0 0
chr16:1977365|1977592 hsa-miR-3620-5p 1 1 0
chr16:1977365|1977592 hsa-miR-10396b-5p 1 0 0
chr16:1977365|1977592 hsa-miR-1237-5p 1 0 0
chr16:1977365|1977592 hsa-miR-328-5p 1 0 0
chr16:1977365|1977592 hsa-miR-4632-5p 1 1 0
chr16:1977365|1977592 hsa-miR-4745-5p 1 1 0
chr16:1977365|1977592 hsa-miR-675-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6795-5p 1 1 0
chr16:1977365|1977592 hsa-miR-6846-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6848-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6887-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6885-5p 1 0 0
chr16:1977365|1977592 hsa-miR-4758-5p 1 1 0
chr16:1977365|1977592 hsa-miR-3940-5p 1 1 0
chr16:1977365|1977592 hsa-miR-4665-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6877-3p 0 1 0
chr16:1977365|1977592 hsa-miR-4472 1 1 0
chr16:1977365|1977592 hsa-miR-6766-5p 0 1 0
chr16:1977365|1977592 hsa-miR-6762-5p 1 0 0
chr16:1977365|1977592 hsa-miR-4757-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6751-3p 0 1 0
chr16:1977365|1977592 hsa-miR-6819-3p 0 1 0
chr16:1977365|1977592 hsa-miR-6823-3p 0 1 0
chr16:1977365|1977592 hsa-miR-323b-5p 1 0 0
chr16:1977365|1977592 hsa-miR-6806-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:1977365|1977592
ORF Type ORF1
Protein Length 75
Nucleotide Length 225
Protein Sequence LSSWASSVRTHSLFLMVQSFTRPSEPLGLGWGEAQRQAGPPATPHSIAAPPQPTHLDSSCVPRLTKATFSTEASC
Nucleotide Sequence TTGTCCTCGTGGGCATCCAGCGTCCGCACACACTCGTTGTTCTTGATGGTCCAGAGCTTCACGAGGCCATCCGAACCGCTGGGTTTGGGGTGGGGAGAGGCTCAGCGTCAGGCAGGTCCCCCCGCCACCCCCCACTCCATCGCTGCCCCACCCCAGCCCACTCACCTGGACAGCAGCTGCGTGCCACGGCTCACAAAGGCCACCTTCAGCACAGAAGCATCGTGC
CircID chr16:1977365|1977592
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MPHPSPLTWTAAACHGSQRPPSAQKHRA
Nucleotide Sequence CTGCCCCACCCCAGCCCACTCACCTGGACAGCAGCTGCGTGCCACGGCTCACAAAGGCCACCTTCAGCACAGAAGCATCGTGCC
CircID chr16:1977365|1977592
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MGWGSDGVGGGGGTCLTLSLSPPQTQRFGWPREALDHQEQRVCADAGCPRGQ
Nucleotide Sequence CTGGGGTGGGGCAGCGATGGAGTGGGGGGTGGCGGGGGGACCTGCCTGACGCTGAGCCTCTCCCCACCCCAAACCCAGCGGTTCGGATGGCCTCGTGAAGCTCTGGACCATCAAGAACAACGAGTGTGTGCGGACGCTGGATGCCCACGAGGACAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab