CircRNA Information

General Information
circRNA Basic Information
CircID chr16:2079140|2079320
Strand -
CircType exon
Host Gene ENSG00000103197.15;
Algorism CIRI2;
Sequence CTGTCTGGACATGATGGCTCGATACGTCTTCTCCAACTTCACGGCTGTCCCGAAGAGGTCCAGGCGGCACTACAGGGCTGGGCGGGCCTGCGGGAGCTCCACGGGCAAGCTGGGTTTCACGCTCCCTGTCTTCTAGGTCTCCTGTGGGCGAGTTCCTCCTAGCGGGTGGCAGGACCAAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:2079140|2079320 hsa-miR-198 0 0 1
chr16:2079140|2079320 hsa-miR-133b 0 1 1
chr16:2079140|2079320 hsa-miR-492 0 0 1
chr16:2079140|2079320 hsa-miR-519e-5p 0 0 1
chr16:2079140|2079320 hsa-miR-519e-3p 0 0 1
chr16:2079140|2079320 hsa-miR-620 0 0 1
chr16:2079140|2079320 hsa-miR-1253 0 1 1
chr16:2079140|2079320 hsa-miR-1270 0 0 1
chr16:2079140|2079320 hsa-miR-1324 0 0 1
chr16:2079140|2079320 hsa-miR-769-5p 0 0 1
chr16:2079140|2079320 hsa-miR-146b-3p 0 0 1
chr16:2079140|2079320 hsa-miR-515-3p 0 0 1
chr16:2079140|2079320 hsa-miR-142-3p 0 0 1
chr16:2079140|2079320 hsa-miR-1254 0 0 1
chr16:2079140|2079320 hsa-miR-371-3p 0 0 1
chr16:2079140|2079320 hsa-miR-133a 0 0 1
chr16:2079140|2079320 hsa-miR-940 1 0 0
chr16:2079140|2079320 hsa-miR-4298 1 0 0
chr16:2079140|2079320 hsa-miR-4488 1 0 0
chr16:2079140|2079320 hsa-miR-4739 1 0 0
chr16:2079140|2079320 hsa-miR-4767 1 0 0
chr16:2079140|2079320 hsa-miR-5681b 1 0 0
chr16:2079140|2079320 hsa-miR-6090 0 1 0
chr16:2079140|2079320 hsa-miR-8073 1 0 0
chr16:2079140|2079320 hsa-miR-218-2-3p 1 0 0
chr16:2079140|2079320 hsa-miR-6720-5p 1 1 0
chr16:2079140|2079320 hsa-miR-766-5p 0 1 0
chr16:2079140|2079320 hsa-miR-4768-3p 0 1 0
chr16:2079140|2079320 hsa-miR-3928-3p 1 0 0
chr16:2079140|2079320 hsa-miR-6727-5p 1 0 0
chr16:2079140|2079320 hsa-miR-6805-5p 1 0 0
chr16:2079140|2079320 hsa-miR-6770-5p 1 0 0
chr16:2079140|2079320 hsa-miR-4763-5p 1 1 0
chr16:2079140|2079320 hsa-miR-4707-3p 0 1 0
chr16:2079140|2079320 hsa-miR-6771-5p 1 0 0
chr16:2079140|2079320 hsa-miR-6847-5p 1 1 0
chr16:2079140|2079320 hsa-miR-3690 0 1 0
chr16:2079140|2079320 hsa-miR-7152-3p 1 0 0
chr16:2079140|2079320 hsa-miR-1910-5p 1 1 0
chr16:2079140|2079320 hsa-miR-371a-3p 0 1 0
chr16:2079140|2079320 hsa-miR-6508-3p 0 1 0
chr16:2079140|2079320 hsa-miR-133a-3p 0 1 0
chr16:2079140|2079320 hsa-miR-4763-3p 1 0 0
chr16:2079140|2079320 hsa-miR-6775-5p 1 0 0
chr16:2079140|2079320 hsa-miR-1343-5p 1 0 0
chr16:2079140|2079320 hsa-miR-6726-5p 1 0 0
chr16:2079140|2079320 hsa-miR-6808-5p 1 1 0
chr16:2079140|2079320 hsa-miR-4725-3p 1 0 0
chr16:2079140|2079320 hsa-miR-6889-5p 1 1 0
chr16:2079140|2079320 hsa-miR-939-5p 1 0 0
chr16:2079140|2079320 hsa-miR-3116 0 1 0
chr16:2079140|2079320 hsa-miR-4722-3p 1 0 0
chr16:2079140|2079320 hsa-miR-6727-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:2079140|2079320
ORF Type ORF1
Protein Length 53
Nucleotide Length 162
Protein Sequence LSGHDGSIRLLQLHGCPEEVQAALQGWAGLRELHGQAGFHAPCLLGLLWASSS
Nucleotide Sequence CTGTCTGGACATGATGGCTCGATACGTCTTCTCCAACTTCACGGCTGTCCCGAAGAGGTCCAGGCGGCACTACAGGGCTGGGCGGGCCTGCGGGAGCTCCACGGGCAAGCTGGGTTTCACGCTCCCTGTCTTCTAGGTCTCCTGTGGGCGAGTTCCTCCTAG
CircID chr16:2079140|2079320
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MDMMARYVFSNFTAVPKRSRRHYRAGRACGSSTGKLGFTLPVF
Nucleotide Sequence CTGGACATGATGGCTCGATACGTCTTCTCCAACTTCACGGCTGTCCCGAAGAGGTCCAGGCGGCACTACAGGGCTGGGCGGGCCTGCGGGAGCTCCACGGGCAAGCTGGGTTTCACGCTCCCTGTCTTCTAG
CircID chr16:2079140|2079320
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MSRRGPGGTTGLGGPAGAPRASWVSRSLSSRSPVGEFLLAGGRTK
Nucleotide Sequence CTGTCCCGAAGAGGTCCAGGCGGCACTACAGGGCTGGGCGGGCCTGCGGGAGCTCCACGGGCAAGCTGGGTTTCACGCTCCCTGTCTTCTAGGTCTCCTGTGGGCGAGTTCCTCCTAGCGGGTGGCAGGACCAAA
CircID chr16:2079140|2079320
ORF Type ORF4
Protein Length 59
Nucleotide Length 177
Protein Sequence MVLPPARRNSPTGDLEDRERETQLARGAPAGPPSPVVPPGPLRDSREVGEDVSSHHVQT
Nucleotide Sequence TTGGTCCTGCCACCCGCTAGGAGGAACTCGCCCACAGGAGACCTAGAAGACAGGGAGCGTGAAACCCAGCTTGCCCGTGGAGCTCCCGCAGGCCCGCCCAGCCCTGTAGTGCCGCCTGGACCTCTTCGGGACAGCCGTGAAGTTGGAGAAGACGTATCGAGCCATCATGTCCAGACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab