CircRNA Information

General Information
circRNA Basic Information
CircID chr16:2090088|2090374
Strand +
CircType exon
Host Gene ENSG00000008710.16;
Algorism CIRI2;
Sequence CGGCCGGCCTGGGAGCCCCAGGACTACGAGATGGTGGAGTTGTTCCTGCGCAGGCTGCGCCTCTGGATGGGCCTCAGCAAGGTCAAGGAGGTGGGTACGGCCCAGTGGGGGGGAGAGGGACACGCCCTGGGCTCTGCCCAGGGTGCAGCCGGACTGACTGAGCCCCTGTGCCGCCCCCAGTTCCGCCACAAAGTCCGCTTTGAAGGGATGGAGCCGCTGCCCTCTCGCTCCTCCAGGGGCTCCAAGGTATCCCCGGATGTGCCCCCACCCAGCGCTGGCTCCGATGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:2090088|2090374 hsa-miR-192-5p 0 0 1
chr16:2090088|2090374 hsa-miR-192-3p 0 0 1
chr16:2090088|2090374 hsa-miR-215-5p 0 0 1
chr16:2090088|2090374 hsa-miR-215-3p 0 0 1
chr16:2090088|2090374 hsa-miR-432-5p 0 0 1
chr16:2090088|2090374 hsa-miR-432-3p 0 0 1
chr16:2090088|2090374 hsa-miR-596 1 0 1
chr16:2090088|2090374 hsa-miR-612 1 1 1
chr16:2090088|2090374 hsa-miR-637 1 1 1
chr16:2090088|2090374 hsa-miR-765 0 1 1
chr16:2090088|2090374 hsa-miR-873-5p 0 0 1
chr16:2090088|2090374 hsa-miR-873-3p 0 0 1
chr16:2090088|2090374 hsa-miR-1293 0 0 1
chr16:2090088|2090374 hsa-miR-1225-3p 0 1 1
chr16:2090088|2090374 hsa-miR-542-5p 0 0 1
chr16:2090088|2090374 hsa-miR-885-3p 0 0 1
chr16:2090088|2090374 hsa-miR-525-5p 0 1 1
chr16:2090088|2090374 hsa-miR-330-3p 0 0 1
chr16:2090088|2090374 hsa-miR-1224-3p 0 1 1
chr16:2090088|2090374 hsa-miR-331-3p 0 1 1
chr16:2090088|2090374 hsa-miR-188-5p 0 1 1
chr16:2090088|2090374 hsa-miR-628-5p 0 0 1
chr16:2090088|2090374 hsa-miR-520a-5p 0 1 1
chr16:2090088|2090374 hsa-miR-455-3p 0 0 1
chr16:2090088|2090374 hsa-miR-642 0 0 1
chr16:2090088|2090374 hsa-miR-220c 0 0 1
chr16:2090088|2090374 hsa-miR-1285 0 0 1
chr16:2090088|2090374 hsa-miR-1268 0 0 1
chr16:2090088|2090374 hsa-miR-24 0 0 1
chr16:2090088|2090374 hsa-miR-608 1 0 0
chr16:2090088|2090374 hsa-miR-762 1 0 0
chr16:2090088|2090374 hsa-miR-933 1 1 0
chr16:2090088|2090374 hsa-miR-1203 1 0 0
chr16:2090088|2090374 hsa-miR-2861 1 0 0
chr16:2090088|2090374 hsa-miR-3196 1 1 0
chr16:2090088|2090374 hsa-miR-3197 0 1 0
chr16:2090088|2090374 hsa-miR-4260 1 0 0
chr16:2090088|2090374 hsa-miR-4326 0 1 0
chr16:2090088|2090374 hsa-miR-4292 0 1 0
chr16:2090088|2090374 hsa-miR-4466 1 0 0
chr16:2090088|2090374 hsa-miR-4488 1 1 0
chr16:2090088|2090374 hsa-miR-4523 1 0 0
chr16:2090088|2090374 hsa-miR-6090 1 1 0
chr16:2090088|2090374 hsa-miR-6860 0 1 0
chr16:2090088|2090374 hsa-miR-4731-5p 0 1 0
chr16:2090088|2090374 hsa-miR-6765-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6861-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6892-3p 1 1 0
chr16:2090088|2090374 hsa-miR-6089 1 0 0
chr16:2090088|2090374 hsa-miR-6880-5p 0 1 0
chr16:2090088|2090374 hsa-miR-4722-5p 1 0 0
chr16:2090088|2090374 hsa-miR-7160-5p 0 1 0
chr16:2090088|2090374 hsa-miR-24-3p 0 1 0
chr16:2090088|2090374 hsa-miR-6727-5p 1 1 0
chr16:2090088|2090374 hsa-miR-6845-3p 1 0 0
chr16:2090088|2090374 hsa-miR-7108-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6716-5p 1 0 0
chr16:2090088|2090374 hsa-miR-3180-3p 1 0 0
chr16:2090088|2090374 hsa-miR-6732-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6798-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6774-3p 0 1 0
chr16:2090088|2090374 hsa-miR-5008-5p 0 1 0
chr16:2090088|2090374 hsa-miR-6850-5p 1 0 0
chr16:2090088|2090374 hsa-miR-1343-3p 0 1 0
chr16:2090088|2090374 hsa-miR-6786-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6852-5p 0 1 0
chr16:2090088|2090374 hsa-miR-1226-5p 1 0 0
chr16:2090088|2090374 hsa-miR-4786-3p 1 0 0
chr16:2090088|2090374 hsa-miR-1229-5p 1 0 0
chr16:2090088|2090374 hsa-miR-1228-5p 1 0 0
chr16:2090088|2090374 hsa-miR-296-3p 1 0 0
chr16:2090088|2090374 hsa-miR-92b-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6749-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6818-3p 0 1 0
chr16:2090088|2090374 hsa-miR-4787-5p 1 0 0
chr16:2090088|2090374 hsa-miR-149-3p 1 0 0
chr16:2090088|2090374 hsa-miR-937-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6789-5p 1 0 0
chr16:2090088|2090374 hsa-miR-4646-3p 1 1 0
chr16:2090088|2090374 hsa-miR-6813-3p 0 1 0
chr16:2090088|2090374 hsa-miR-1296-5p 1 0 0
chr16:2090088|2090374 hsa-miR-4649-3p 0 1 0
chr16:2090088|2090374 hsa-miR-2277-5p 1 0 0
chr16:2090088|2090374 hsa-miR-4283 0 1 0
chr16:2090088|2090374 hsa-miR-3670 0 1 0
chr16:2090088|2090374 hsa-miR-642a-5p 0 1 0
chr16:2090088|2090374 hsa-miR-10400-5p 1 0 0
chr16:2090088|2090374 hsa-miR-4763-3p 1 0 0
chr16:2090088|2090374 hsa-miR-6769b-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6816-5p 1 1 0
chr16:2090088|2090374 hsa-miR-6726-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6737-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6752-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6756-5p 1 1 0
chr16:2090088|2090374 hsa-miR-6769a-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6803-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6813-5p 0 1 0
chr16:2090088|2090374 hsa-miR-6819-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6851-5p 1 0 0
chr16:2090088|2090374 hsa-miR-7107-5p 0 1 0
chr16:2090088|2090374 hsa-miR-11181-3p 0 1 0
chr16:2090088|2090374 hsa-miR-6722-3p 1 0 0
chr16:2090088|2090374 hsa-miR-4755-5p 0 1 0
chr16:2090088|2090374 hsa-miR-1915-3p 0 1 0
chr16:2090088|2090374 hsa-miR-3620-5p 1 0 0
chr16:2090088|2090374 hsa-miR-1237-5p 1 1 0
chr16:2090088|2090374 hsa-miR-1909-3p 1 0 0
chr16:2090088|2090374 hsa-miR-328-5p 1 1 0
chr16:2090088|2090374 hsa-miR-4632-5p 1 1 0
chr16:2090088|2090374 hsa-miR-4649-5p 1 0 0
chr16:2090088|2090374 hsa-miR-4685-5p 1 1 0
chr16:2090088|2090374 hsa-miR-6729-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6794-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6795-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6846-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6848-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6887-5p 1 0 0
chr16:2090088|2090374 hsa-miR-3187-5p 0 1 0
chr16:2090088|2090374 hsa-miR-6885-5p 1 0 0
chr16:2090088|2090374 hsa-miR-939-5p 1 0 0
chr16:2090088|2090374 hsa-miR-4633-3p 1 0 0
chr16:2090088|2090374 hsa-miR-3940-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6856-5p 0 1 0
chr16:2090088|2090374 hsa-miR-7843-5p 0 1 0
chr16:2090088|2090374 hsa-miR-4665-5p 1 1 0
chr16:2090088|2090374 hsa-miR-6736-5p 1 0 0
chr16:2090088|2090374 hsa-miR-6766-5p 1 1 0
chr16:2090088|2090374 hsa-miR-6791-5p 1 1 0
chr16:2090088|2090374 hsa-miR-6762-5p 1 0 0
chr16:2090088|2090374 hsa-miR-5009-5p 0 1 0
chr16:2090088|2090374 hsa-miR-3059-5p 1 1 0
chr16:2090088|2090374 hsa-miR-7114-3p 1 0 0
chr16:2090088|2090374 hsa-miR-6783-3p 0 1 0
chr16:2090088|2090374 hsa-miR-10397-5p 1 1 0
chr16:2090088|2090374 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:2090088|2090374
ORF Type ORF1
Protein Length 85
Nucleotide Length 255
Protein Sequence MVELFLRRLRLWMGLSKVKEVGTAQWGGEGHALGSAQGAAGLTEPLCRPQFRHKVRFEGMEPLPSRSSRGSKVSPDVPPPSAGSD
Nucleotide Sequence ATGGTGGAGTTGTTCCTGCGCAGGCTGCGCCTCTGGATGGGCCTCAGCAAGGTCAAGGAGGTGGGTACGGCCCAGTGGGGGGGAGAGGGACACGCCCTGGGCTCTGCCCAGGGTGCAGCCGGACTGACTGAGCCCCTGTGCCGCCCCCAGTTCCGCCACAAAGTCCGCTTTGAAGGGATGGAGCCGCTGCCCTCTCGCTCCTCCAGGGGCTCCAAGGTATCCCCGGATGTGCCCCCACCCAGCGCTGGCTCCGAT
CircID chr16:2090088|2090374
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MSPCAAPSSATKSALKGWSRCPLAPPGAPRYPRMCPHPALAPM
Nucleotide Sequence CTGAGCCCCTGTGCCGCCCCCAGTTCCGCCACAAAGTCCGCTTTGAAGGGATGGAGCCGCTGCCCTCTCGCTCCTCCAGGGGCTCCAAGGTATCCCCGGATGTGCCCCCACCCAGCGCTGGCTCCGATG
CircID chr16:2090088|2090374
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MGAPGLRDGGVVPAQAAPLDGPQQGQGGGYGPVGGRGTRPGLCPGCSRTD
Nucleotide Sequence CTGGGAGCCCCAGGACTACGAGATGGTGGAGTTGTTCCTGCGCAGGCTGCGCCTCTGGATGGGCCTCAGCAAGGTCAAGGAGGTGGGTACGGCCCAGTGGGGGGGAGAGGGACACGCCCTGGGCTCTGCCCAGGGTGCAGCCGGACTGACTGA
CircID chr16:2090088|2090374
ORF Type ORF4
Protein Length 82
Nucleotide Length 249
Protein Sequence MGGGTSGDTLEPLEEREGSGSIPSKRTLWRNWGRHRGSVSPAAPWAEPRACPSPPHWAVPTSLTLLRPIQRRSLRRNNSTIS
Nucleotide Sequence CTGGGTGGGGGCACATCCGGGGATACCTTGGAGCCCCTGGAGGAGCGAGAGGGCAGCGGCTCCATCCCTTCAAAGCGGACTTTGTGGCGGAACTGGGGGCGGCACAGGGGCTCAGTCAGTCCGGCTGCACCCTGGGCAGAGCCCAGGGCGTGTCCCTCTCCCCCCCACTGGGCCGTACCCACCTCCTTGACCTTGCTGAGGCCCATCCAGAGGCGCAGCCTGCGCAGGAACAACTCCACCATCTCGTAG
CircID chr16:2090088|2090374
ORF Type ORF5
Protein Length 60
Nucleotide Length 180
Protein Sequence MGAAQGLSQSGCTLGRAQGVSLSPPLGRTHLLDLAEAHPEAQPAQEQLHHLVVLGLPGRP
Nucleotide Sequence CTGGGGGCGGCACAGGGGCTCAGTCAGTCCGGCTGCACCCTGGGCAGAGCCCAGGGCGTGTCCCTCTCCCCCCCACTGGGCCGTACCCACCTCCTTGACCTTGCTGAGGCCCATCCAGAGGCGCAGCCTGCGCAGGAACAACTCCACCATCTCGTAGTCCTGGGGCTCCCAGGCCGGCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab