CircRNA Information

General Information
circRNA Basic Information
CircID chr16:2176105|2176364
Strand -
CircType exon
Host Gene ENSG00000131653.11;
Algorism CIRI2;
Sequence CGTGTATGCCCTGGCGGTCATCTCGACGCCAGACCAGACCAAAGTCTTCAGTGCATCCTACGACCGGTCCCTCAGGGTGCGTGCTGGCCCAGCGGTGGCAGGAGGCTCAGAGGGCTGGCAGCTGAGCTCCGGCGGGCCCTCACGTCCCATGTGCCCCCAGGTCTGGAGTATGGACAACATGATCTGCACGCAGACCCTGCTGCGTCACCAGGGCAGTGTCACCGCGCTGGCTGTGTCCCGGGGCCGACTCTTCTCAGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:2176105|2176364 hsa-miR-22-5p 0 0 1
chr16:2176105|2176364 hsa-miR-22-3p 0 0 1
chr16:2176105|2176364 hsa-miR-214-5p 0 0 1
chr16:2176105|2176364 hsa-miR-214-3p 0 0 1
chr16:2176105|2176364 hsa-miR-143-5p 0 0 1
chr16:2176105|2176364 hsa-miR-143-3p 0 0 1
chr16:2176105|2176364 hsa-miR-133b 0 0 1
chr16:2176105|2176364 hsa-miR-631 0 0 1
chr16:2176105|2176364 hsa-miR-637 1 1 1
chr16:2176105|2176364 hsa-miR-874-5p 0 0 1
chr16:2176105|2176364 hsa-miR-874-3p 0 0 1
chr16:2176105|2176364 hsa-miR-1182 0 1 1
chr16:2176105|2176364 hsa-miR-1202 0 0 1
chr16:2176105|2176364 hsa-miR-1203 1 1 1
chr16:2176105|2176364 hsa-miR-1253 0 0 1
chr16:2176105|2176364 hsa-miR-1265 0 0 1
chr16:2176105|2176364 hsa-miR-146b-3p 0 0 1
chr16:2176105|2176364 hsa-miR-508-5p 0 1 1
chr16:2176105|2176364 hsa-miR-1207-3p 0 0 1
chr16:2176105|2176364 hsa-miR-125a-5p 0 1 1
chr16:2176105|2176364 hsa-miR-125b 0 0 1
chr16:2176105|2176364 hsa-miR-9 0 0 1
chr16:2176105|2176364 hsa-miR-1300 0 0 1
chr16:2176105|2176364 hsa-miR-133a 0 0 1
chr16:2176105|2176364 hsa-miR-638 1 0 0
chr16:2176105|2176364 hsa-miR-762 1 0 0
chr16:2176105|2176364 hsa-miR-761 0 1 0
chr16:2176105|2176364 hsa-miR-935 1 0 0
chr16:2176105|2176364 hsa-miR-1976 0 1 0
chr16:2176105|2176364 hsa-miR-4251 0 1 0
chr16:2176105|2176364 hsa-miR-4292 1 0 0
chr16:2176105|2176364 hsa-miR-3661 1 1 0
chr16:2176105|2176364 hsa-miR-3921 0 1 0
chr16:2176105|2176364 hsa-miR-4449 1 0 0
chr16:2176105|2176364 hsa-miR-4488 1 0 0
chr16:2176105|2176364 hsa-miR-4510 1 0 0
chr16:2176105|2176364 hsa-miR-4527 0 1 0
chr16:2176105|2176364 hsa-miR-3972 0 1 0
chr16:2176105|2176364 hsa-miR-4654 1 0 0
chr16:2176105|2176364 hsa-miR-4751 1 0 0
chr16:2176105|2176364 hsa-miR-4785 1 1 0
chr16:2176105|2176364 hsa-miR-5694 0 1 0
chr16:2176105|2176364 hsa-miR-6088 0 1 0
chr16:2176105|2176364 hsa-miR-6127 1 0 0
chr16:2176105|2176364 hsa-miR-8089 1 0 0
chr16:2176105|2176364 hsa-miR-12119 1 0 0
chr16:2176105|2176364 hsa-miR-134-3p 1 0 0
chr16:2176105|2176364 hsa-miR-1247-3p 0 1 0
chr16:2176105|2176364 hsa-miR-4665-3p 1 1 0
chr16:2176105|2176364 hsa-miR-6720-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6854-5p 0 1 0
chr16:2176105|2176364 hsa-miR-6089 1 0 0
chr16:2176105|2176364 hsa-miR-4722-5p 1 0 0
chr16:2176105|2176364 hsa-miR-4761-3p 0 1 0
chr16:2176105|2176364 hsa-miR-6776-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6787-3p 1 1 0
chr16:2176105|2176364 hsa-miR-3663-5p 0 1 0
chr16:2176105|2176364 hsa-miR-6805-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6770-5p 1 0 0
chr16:2176105|2176364 hsa-miR-4793-3p 1 0 0
chr16:2176105|2176364 hsa-miR-3194-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6821-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6882-3p 1 0 0
chr16:2176105|2176364 hsa-miR-1226-5p 0 1 0
chr16:2176105|2176364 hsa-miR-6853-5p 1 0 0
chr16:2176105|2176364 hsa-miR-4763-5p 1 0 0
chr16:2176105|2176364 hsa-miR-4707-3p 0 1 0
chr16:2176105|2176364 hsa-miR-1908-3p 1 0 0
chr16:2176105|2176364 hsa-miR-4640-5p 1 1 0
chr16:2176105|2176364 hsa-miR-92b-5p 1 0 0
chr16:2176105|2176364 hsa-miR-4717-3p 0 1 0
chr16:2176105|2176364 hsa-miR-7854-3p 1 0 0
chr16:2176105|2176364 hsa-miR-6834-5p 1 1 0
chr16:2176105|2176364 hsa-miR-6781-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6892-5p 1 0 0
chr16:2176105|2176364 hsa-miR-1910-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6856-3p 0 1 0
chr16:2176105|2176364 hsa-miR-2277-5p 1 0 0
chr16:2176105|2176364 hsa-miR-3912-5p 0 1 0
chr16:2176105|2176364 hsa-miR-5589-3p 0 1 0
chr16:2176105|2176364 hsa-miR-3670 0 1 0
chr16:2176105|2176364 hsa-miR-4738-5p 0 1 0
chr16:2176105|2176364 hsa-miR-4763-3p 1 1 0
chr16:2176105|2176364 hsa-miR-6775-5p 0 1 0
chr16:2176105|2176364 hsa-miR-6803-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6875-5p 0 1 0
chr16:2176105|2176364 hsa-miR-10396b-5p 1 0 0
chr16:2176105|2176364 hsa-miR-328-5p 1 0 0
chr16:2176105|2176364 hsa-miR-4726-5p 1 1 0
chr16:2176105|2176364 hsa-miR-6795-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6848-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6858-5p 1 0 0
chr16:2176105|2176364 hsa-miR-10394-3p 1 0 0
chr16:2176105|2176364 hsa-miR-10396a-3p 0 1 0
chr16:2176105|2176364 hsa-miR-10396b-3p 0 1 0
chr16:2176105|2176364 hsa-miR-1199-5p 0 1 0
chr16:2176105|2176364 hsa-miR-4665-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6791-3p 0 1 0
chr16:2176105|2176364 hsa-miR-4646-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6724-5p 1 0 0
chr16:2176105|2176364 hsa-miR-6791-5p 1 0 0
chr16:2176105|2176364 hsa-miR-4722-3p 1 1 0
chr16:2176105|2176364 hsa-miR-6727-3p 0 1 0
chr16:2176105|2176364 hsa-miR-6829-3p 0 1 0
chr16:2176105|2176364 hsa-miR-10392-3p 0 1 0
chr16:2176105|2176364 hsa-miR-6751-3p 0 1 0
chr16:2176105|2176364 hsa-miR-3619-5p 0 1 0
chr16:2176105|2176364 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:2176105|2176364
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MAAELRRALTSHVPPGLEYGQHDLHADPAASPGQCHRAGCVPGPTLLR
Nucleotide Sequence CTGGCAGCTGAGCTCCGGCGGGCCCTCACGTCCCATGTGCCCCCAGGTCTGGAGTATGGACAACATGATCTGCACGCAGACCCTGCTGCGTCACCAGGGCAGTGTCACCGCGCTGGCTGTGTCCCGGGGCCGACTCTTCTCAGG
CircID chr16:2176105|2176364
ORF Type ORF2
Protein Length 83
Nucleotide Length 249
Protein Sequence MAVISTPDQTKVFSASYDRSLRVRAGPAVAGGSEGWQLSSGGPSRPMCPQVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG
Nucleotide Sequence CTGGCGGTCATCTCGACGCCAGACCAGACCAAAGTCTTCAGTGCATCCTACGACCGGTCCCTCAGGGTGCGTGCTGGCCCAGCGGTGGCAGGAGGCTCAGAGGGCTGGCAGCTGAGCTCCGGCGGGCCCTCACGTCCCATGTGCCCCCAGGTCTGGAGTATGGACAACATGATCTGCACGCAGACCCTGCTGCGTCACCAGGGCAGTGTCACCGCGCTGGCTGTGTCCCGGGGCCGACTCTTCTCAGGG
CircID chr16:2176105|2176364
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MPWRSSRRQTRPKSSVHPTTGPSGCVLAQRWQEAQRAGS
Nucleotide Sequence ATGCCCTGGCGGTCATCTCGACGCCAGACCAGACCAAAGTCTTCAGTGCATCCTACGACCGGTCCCTCAGGGTGCGTGCTGGCCCAGCGGTGGCAGGAGGCTCAGAGGGCTGGCAGCTGA
CircID chr16:2176105|2176364
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MLSILQTWGHMGREGPPELSCQPSEPPATAGPARTLRDRS
Nucleotide Sequence ATGTTGTCCATACTCCAGACCTGGGGGCACATGGGACGTGAGGGCCCGCCGGAGCTCAGCTGCCAGCCCTCTGAGCCTCCTGCCACCGCTGGGCCAGCACGCACCCTGAGGGACCGGTCGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab