CircRNA Information

General Information
circRNA Basic Information
CircID chr16:25216973|25217259
Strand +
CircType exon
Host Gene ENSG00000103375.9;
Algorism CIRI2;
Sequence CTGCCACCCACGCTCGGCTCCCTGGCCTTGTCATTGCCAAATTCAGGCTCACACATGGCTATCTGCCGTAGGGAAAAAGGGACAGAGGACACGGGTGGGAGGCAAGTCCAGATATAGAAGGCCCCGACCCCCAACCTTGAATTAATTCACAGCCCCCCTTGCTCTGCCAGCCTGGAGAGGAAGATGCCGACAGAGGGCTCACCTCTCCAGACATCAGGATCAGATGGCACAAACATCGGACTCTTGCCTGAGCTGCTGGGAAACCTGCACCTGCTGTGCAAGATACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:25216973|25217259 hsa-miR-31-5p 0 0 1
chr16:25216973|25217259 hsa-miR-31-3p 0 0 1
chr16:25216973|25217259 hsa-miR-96-5p 0 0 1
chr16:25216973|25217259 hsa-miR-96-3p 0 0 1
chr16:25216973|25217259 hsa-miR-182-5p 0 0 1
chr16:25216973|25217259 hsa-miR-182-3p 0 0 1
chr16:25216973|25217259 hsa-miR-204-5p 0 0 1
chr16:25216973|25217259 hsa-miR-204-3p 0 0 1
chr16:25216973|25217259 hsa-miR-211-5p 0 0 1
chr16:25216973|25217259 hsa-miR-211-3p 0 0 1
chr16:25216973|25217259 hsa-miR-214-5p 0 0 1
chr16:25216973|25217259 hsa-miR-214-3p 0 0 1
chr16:25216973|25217259 hsa-miR-185-5p 0 0 1
chr16:25216973|25217259 hsa-miR-185-3p 0 0 1
chr16:25216973|25217259 hsa-miR-422a 0 0 1
chr16:25216973|25217259 hsa-miR-646 0 0 1
chr16:25216973|25217259 hsa-miR-657 0 0 1
chr16:25216973|25217259 hsa-miR-1271-5p 0 0 1
chr16:25216973|25217259 hsa-miR-1271-3p 0 0 1
chr16:25216973|25217259 hsa-miR-766-5p 0 0 1
chr16:25216973|25217259 hsa-miR-766-3p 0 0 1
chr16:25216973|25217259 hsa-miR-1227-5p 0 0 1
chr16:25216973|25217259 hsa-miR-1227-3p 0 0 1
chr16:25216973|25217259 hsa-miR-1231 0 1 1
chr16:25216973|25217259 hsa-miR-1293 0 0 1
chr16:25216973|25217259 hsa-miR-1257 0 0 1
chr16:25216973|25217259 hsa-miR-1275 0 0 1
chr16:25216973|25217259 hsa-miR-1225-3p 0 0 1
chr16:25216973|25217259 hsa-miR-532-3p 0 0 1
chr16:25216973|25217259 hsa-miR-1224-3p 0 0 1
chr16:25216973|25217259 hsa-miR-654-3p 0 0 1
chr16:25216973|25217259 hsa-miR-1260 0 0 1
chr16:25216973|25217259 hsa-miR-1280 0 0 1
chr16:25216973|25217259 hsa-miR-1233 0 0 1
chr16:25216973|25217259 hsa-miR-886-5p 0 0 1
chr16:25216973|25217259 hsa-miR-378 0 0 1
chr16:25216973|25217259 hsa-miR-516b 0 0 1
chr16:25216973|25217259 hsa-miR-762 1 0 0
chr16:25216973|25217259 hsa-miR-920 1 0 0
chr16:25216973|25217259 hsa-miR-1260a 0 1 0
chr16:25216973|25217259 hsa-miR-378c 0 1 0
chr16:25216973|25217259 hsa-miR-4270 1 1 0
chr16:25216973|25217259 hsa-miR-3621 1 0 0
chr16:25216973|25217259 hsa-miR-3665 1 1 0
chr16:25216973|25217259 hsa-miR-3937 1 0 0
chr16:25216973|25217259 hsa-miR-378e 0 1 0
chr16:25216973|25217259 hsa-miR-378f 0 1 0
chr16:25216973|25217259 hsa-miR-378h 0 1 0
chr16:25216973|25217259 hsa-miR-4498 1 1 0
chr16:25216973|25217259 hsa-miR-4530 0 1 0
chr16:25216973|25217259 hsa-miR-4537 0 1 0
chr16:25216973|25217259 hsa-miR-4656 1 0 0
chr16:25216973|25217259 hsa-miR-4660 0 1 0
chr16:25216973|25217259 hsa-miR-4675 0 1 0
chr16:25216973|25217259 hsa-miR-4739 1 0 0
chr16:25216973|25217259 hsa-miR-4741 1 0 0
chr16:25216973|25217259 hsa-miR-5787 1 0 0
chr16:25216973|25217259 hsa-miR-6090 1 0 0
chr16:25216973|25217259 hsa-miR-7704 0 1 0
chr16:25216973|25217259 hsa-miR-8058 0 1 0
chr16:25216973|25217259 hsa-miR-10226 0 1 0
chr16:25216973|25217259 hsa-miR-141-5p 0 1 0
chr16:25216973|25217259 hsa-miR-6836-3p 0 1 0
chr16:25216973|25217259 hsa-miR-4687-3p 1 0 0
chr16:25216973|25217259 hsa-miR-6854-5p 0 1 0
chr16:25216973|25217259 hsa-miR-6832-3p 0 1 0
chr16:25216973|25217259 hsa-miR-6829-5p 1 0 0
chr16:25216973|25217259 hsa-miR-6805-5p 1 0 0
chr16:25216973|25217259 hsa-miR-6827-5p 0 1 0
chr16:25216973|25217259 hsa-miR-6798-5p 1 0 0
chr16:25216973|25217259 hsa-miR-6774-3p 0 1 0
chr16:25216973|25217259 hsa-miR-4640-5p 1 1 0
chr16:25216973|25217259 hsa-miR-6749-5p 1 0 0
chr16:25216973|25217259 hsa-miR-6818-3p 0 1 0
chr16:25216973|25217259 hsa-miR-6780a-3p 0 1 0
chr16:25216973|25217259 hsa-miR-4446-3p 1 0 0
chr16:25216973|25217259 hsa-miR-3162-5p 1 1 0
chr16:25216973|25217259 hsa-miR-3922-5p 0 1 0
chr16:25216973|25217259 hsa-miR-2276-5p 0 1 0
chr16:25216973|25217259 hsa-miR-7113-5p 0 1 0
chr16:25216973|25217259 hsa-miR-6748-3p 0 1 0
chr16:25216973|25217259 hsa-miR-1207-5p 1 0 0
chr16:25216973|25217259 hsa-miR-4763-3p 1 0 0
chr16:25216973|25217259 hsa-miR-1343-5p 1 0 0
chr16:25216973|25217259 hsa-miR-6726-5p 1 0 0
chr16:25216973|25217259 hsa-miR-6754-5p 0 1 0
chr16:25216973|25217259 hsa-miR-6803-5p 1 1 0
chr16:25216973|25217259 hsa-miR-6722-3p 1 0 0
chr16:25216973|25217259 hsa-miR-6751-5p 1 1 0
chr16:25216973|25217259 hsa-miR-6852-3p 0 1 0
chr16:25216973|25217259 hsa-miR-328-5p 1 0 0
chr16:25216973|25217259 hsa-miR-4726-5p 0 1 0
chr16:25216973|25217259 hsa-miR-6777-5p 1 1 0
chr16:25216973|25217259 hsa-miR-6846-5p 1 1 0
chr16:25216973|25217259 hsa-miR-6848-5p 1 1 0
chr16:25216973|25217259 hsa-miR-6831-5p 1 0 0
chr16:25216973|25217259 hsa-miR-939-5p 1 0 0
chr16:25216973|25217259 hsa-miR-6731-5p 1 0 0
chr16:25216973|25217259 hsa-miR-378a-3p 0 1 0
chr16:25216973|25217259 hsa-miR-6790-5p 1 0 0
chr16:25216973|25217259 hsa-miR-5591-5p 1 0 0
chr16:25216973|25217259 hsa-miR-6724-5p 1 0 0
chr16:25216973|25217259 hsa-miR-6762-5p 1 0 0
chr16:25216973|25217259 hsa-miR-9851-5p 0 1 0
chr16:25216973|25217259 hsa-miR-6862-3p 0 1 0
chr16:25216973|25217259 hsa-miR-5009-5p 0 1 0
chr16:25216973|25217259 hsa-miR-6829-3p 0 1 0
chr16:25216973|25217259 hsa-miR-3059-5p 0 1 0
chr16:25216973|25217259 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:25216973|25217259
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence LPPTLGSLALSLPNSGSHMAICRREKGTEDTGGRQVQI
Nucleotide Sequence CTGCCACCCACGCTCGGCTCCCTGGCCTTGTCATTGCCAAATTCAGGCTCACACATGGCTATCTGCCGTAGGGAAAAAGGGACAGAGGACACGGGTGGGAGGCAAGTCCAGATATAG
CircID chr16:25216973|25217259
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MERKMPTEGSPLQTSGSDGTNIGLLPELLGNLHLLCKI
Nucleotide Sequence CTGGAGAGGAAGATGCCGACAGAGGGCTCACCTCTCCAGACATCAGGATCAGATGGCACAAACATCGGACTCTTGCCTGAGCTGCTGGGAAACCTGCACCTGCTGTGCAAGATA
CircID chr16:25216973|25217259
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MPAWRGRCRQRAHLSRHQDQMAQTSDSCLSCWETCTCCARY
Nucleotide Sequence CTGCCAGCCTGGAGAGGAAGATGCCGACAGAGGGCTCACCTCTCCAGACATCAGGATCAGATGGCACAAACATCGGACTCTTGCCTGAGCTGCTGGGAAACCTGCACCTGCTGTGCAAGATAC
CircID chr16:25216973|25217259
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MLCQPGEEDADRGLTSPDIRIRWHKHRTLA
Nucleotide Sequence TTGCTCTGCCAGCCTGGAGAGGAAGATGCCGACAGAGGGCTCACCTCTCCAGACATCAGGATCAGATGGCACAAACATCGGACTCTTGCCTGA
CircID chr16:25216973|25217259
ORF Type ORF5
Protein Length 44
Nucleotide Length 135
Protein Sequence MHSRCRFPSSSGKSPMFVPSDPDVWRGEPSVGIFLSRLAEQGGL
Nucleotide Sequence TTGCACAGCAGGTGCAGGTTTCCCAGCAGCTCAGGCAAGAGTCCGATGTTTGTGCCATCTGATCCTGATGTCTGGAGAGGTGAGCCCTCTGTCGGCATCTTCCTCTCCAGGCTGGCAGAGCAAGGGGGGCTGTGA
CircID chr16:25216973|25217259
ORF Type ORF6
Protein Length 44
Nucleotide Length 132
Protein Sequence MGVGAFYIWTCLPPVSSVPFSLRQIAMCEPEFGNDKAREPSVGG
Nucleotide Sequence TTGGGGGTCGGGGCCTTCTATATCTGGACTTGCCTCCCACCCGTGTCCTCTGTCCCTTTTTCCCTACGGCAGATAGCCATGTGTGAGCCTGAATTTGGCAATGACAAGGCCAGGGAGCCGAGCGTGGGTGGC
CircID chr16:25216973|25217259
ORF Type ORF7
Protein Length 57
Nucleotide Length 174
Protein Sequence MCHLILMSGEVSPLSASSSPGWQSKGGCELIQGWGSGPSISGLASHPCPLSLFPYGR
Nucleotide Sequence TTGTGCCATCTGATCCTGATGTCTGGAGAGGTGAGCCCTCTGTCGGCATCTTCCTCTCCAGGCTGGCAGAGCAAGGGGGGCTGTGAATTAATTCAAGGTTGGGGGTCGGGGCCTTCTATATCTGGACTTGCCTCCCACCCGTGTCCTCTGTCCCTTTTTCCCTACGGCAGATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab