CircRNA Information

General Information
circRNA Basic Information
CircID chr16:27324403|27324570
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCGGGCCTTATGTGTTTGGTGCTCATATCCCCTACTGCAAGGCCAGCTCACACAAGGCCAGTGTCGATCCCGCTCACAGCCATCTCCCCAGAGCCTAGCACGGTGCCTGGCACACAGCAGGTGCTCCATGAATATTTGCTGAATGGAAGAACGACAGGATGAATTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:27324403|27324570 hsa-miR-29a-5p 0 0 1
chr16:27324403|27324570 hsa-miR-29a-3p 0 0 1
chr16:27324403|27324570 hsa-miR-29c-5p 0 0 1
chr16:27324403|27324570 hsa-miR-29c-3p 0 0 1
chr16:27324403|27324570 hsa-miR-370-5p 0 0 1
chr16:27324403|27324570 hsa-miR-370-3p 0 0 1
chr16:27324403|27324570 hsa-miR-326 0 0 1
chr16:27324403|27324570 hsa-miR-193b-5p 0 0 1
chr16:27324403|27324570 hsa-miR-193b-3p 0 0 1
chr16:27324403|27324570 hsa-miR-545-5p 0 0 1
chr16:27324403|27324570 hsa-miR-545-3p 0 0 1
chr16:27324403|27324570 hsa-miR-558 0 0 1
chr16:27324403|27324570 hsa-miR-581 0 0 1
chr16:27324403|27324570 hsa-miR-637 1 0 1
chr16:27324403|27324570 hsa-miR-638 1 0 1
chr16:27324403|27324570 hsa-miR-645 0 0 1
chr16:27324403|27324570 hsa-miR-760 1 1 1
chr16:27324403|27324570 hsa-miR-939-5p 0 0 1
chr16:27324403|27324570 hsa-miR-939-3p 0 0 1
chr16:27324403|27324570 hsa-miR-1227-5p 0 0 1
chr16:27324403|27324570 hsa-miR-1227-3p 0 0 1
chr16:27324403|27324570 hsa-miR-490-5p 0 0 1
chr16:27324403|27324570 hsa-miR-556-5p 0 0 1
chr16:27324403|27324570 hsa-miR-330-5p 0 0 1
chr16:27324403|27324570 hsa-miR-193a-3p 0 0 1
chr16:27324403|27324570 hsa-miR-369-5p 0 0 1
chr16:27324403|27324570 hsa-miR-664 0 0 1
chr16:27324403|27324570 hsa-miR-147 0 0 1
chr16:27324403|27324570 hsa-miR-29b 0 0 1
chr16:27324403|27324570 hsa-miR-612 1 0 0
chr16:27324403|27324570 hsa-miR-762 1 0 0
chr16:27324403|27324570 hsa-miR-1275 1 0 0
chr16:27324403|27324570 hsa-miR-2110 1 0 0
chr16:27324403|27324570 hsa-miR-3937 1 0 0
chr16:27324403|27324570 hsa-miR-4487 1 0 0
chr16:27324403|27324570 hsa-miR-4498 1 0 0
chr16:27324403|27324570 hsa-miR-4673 0 1 0
chr16:27324403|27324570 hsa-miR-4674 1 0 0
chr16:27324403|27324570 hsa-miR-4741 1 0 0
chr16:27324403|27324570 hsa-miR-6081 1 0 0
chr16:27324403|27324570 hsa-miR-6860 1 0 0
chr16:27324403|27324570 hsa-miR-8073 1 0 0
chr16:27324403|27324570 hsa-miR-8085 1 0 0
chr16:27324403|27324570 hsa-miR-8089 1 1 0
chr16:27324403|27324570 hsa-miR-125b-1-3p 1 0 0
chr16:27324403|27324570 hsa-miR-3150a-3p 1 1 0
chr16:27324403|27324570 hsa-miR-6825-5p 1 0 0
chr16:27324403|27324570 hsa-miR-3663-3p 1 1 0
chr16:27324403|27324570 hsa-miR-4755-3p 1 0 0
chr16:27324403|27324570 hsa-miR-8069 1 1 0
chr16:27324403|27324570 hsa-miR-6810-5p 1 0 0
chr16:27324403|27324570 hsa-miR-7109-5p 1 0 0
chr16:27324403|27324570 hsa-miR-6757-3p 0 1 0
chr16:27324403|27324570 hsa-miR-889-5p 0 1 0
chr16:27324403|27324570 hsa-miR-6516-5p 1 1 0
chr16:27324403|27324570 hsa-miR-4446-3p 1 0 0
chr16:27324403|27324570 hsa-miR-6824-5p 1 1 0
chr16:27324403|27324570 hsa-miR-5010-5p 1 1 0
chr16:27324403|27324570 hsa-miR-6812-5p 1 0 0
chr16:27324403|27324570 hsa-miR-6870-5p 1 0 0
chr16:27324403|27324570 hsa-miR-1343-5p 1 0 0
chr16:27324403|27324570 hsa-miR-5001-5p 1 0 0
chr16:27324403|27324570 hsa-miR-10401-5p 1 0 0
chr16:27324403|27324570 hsa-miR-6763-5p 1 1 0
chr16:27324403|27324570 hsa-miR-3620-5p 1 0 0
chr16:27324403|27324570 hsa-miR-4728-5p 1 0 0
chr16:27324403|27324570 hsa-miR-6795-5p 1 0 0
chr16:27324403|27324570 hsa-miR-6846-5p 1 0 0
chr16:27324403|27324570 hsa-miR-6848-5p 1 0 0
chr16:27324403|27324570 hsa-miR-3187-5p 1 0 0
chr16:27324403|27324570 hsa-miR-4758-5p 1 0 0
chr16:27324403|27324570 hsa-miR-1271-3p 0 1 0
chr16:27324403|27324570 hsa-miR-4665-5p 1 0 0
chr16:27324403|27324570 hsa-miR-4700-5p 1 1 0
chr16:27324403|27324570 hsa-miR-4646-5p 1 0 0
chr16:27324403|27324570 hsa-miR-6791-5p 1 0 0
chr16:27324403|27324570 hsa-miR-10400-3p 1 0 0
chr16:27324403|27324570 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:27324403|27324570
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MCLVLISPTARPAHTRPVSIPLTAISPEPSTVPGTQQVLHEYLLNGRTTG
Nucleotide Sequence ATGTGTTTGGTGCTCATATCCCCTACTGCAAGGCCAGCTCACACAAGGCCAGTGTCGATCCCGCTCACAGCCATCTCCCCAGAGCCTAGCACGGTGCCTGGCACACAGCAGGTGCTCCATGAATATTTGCTGAATGGAAGAACGACAGGATGA
CircID chr16:27324403|27324570
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MQGQLTQGQCRSRSQPSPQSLARCLAHSRCSMNIC
Nucleotide Sequence CTGCAAGGCCAGCTCACACAAGGCCAGTGTCGATCCCGCTCACAGCCATCTCCCCAGAGCCTAGCACGGTGCCTGGCACACAGCAGGTGCTCCATGAATATTTGCTGA
CircID chr16:27324403|27324570
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MEHLLCARHRARLWGDGCERDRHWPCVSWPCSRGYEHQTHKAR
Nucleotide Sequence ATGGAGCACCTGCTGTGTGCCAGGCACCGTGCTAGGCTCTGGGGAGATGGCTGTGAGCGGGATCGACACTGGCCTTGTGTGAGCTGGCCTTGCAGTAGGGGATATGAGCACCAAACACATAAGGCCCGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab