CircRNA Information

General Information
circRNA Basic Information
CircID chr16:27469463|27470124
Strand -
CircType exon
Host Gene ENSG00000077235.16;
Algorism CIRI2;
Sequence CTCCATGCTCCGGCGCTTGCCCCCTACACCTTCGTCCAAGTCATCCTCTTCATCCTCGTCATCCTCCAGGCTGCCGTCCTTCCCCAAGCTTTTGATGACCTCATT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:27469463|27470124 hsa-miR-765 1 0 1
chr16:27469463|27470124 hsa-miR-890 0 0 1
chr16:27469463|27470124 hsa-miR-1203 0 0 1
chr16:27469463|27470124 hsa-miR-1254 0 0 1
chr16:27469463|27470124 hsa-miR-1265 1 0 0
chr16:27469463|27470124 hsa-miR-1275 1 0 0
chr16:27469463|27470124 hsa-miR-2110 1 1 0
chr16:27469463|27470124 hsa-miR-2861 1 0 0
chr16:27469463|27470124 hsa-miR-3131 1 0 0
chr16:27469463|27470124 hsa-miR-3137 1 0 0
chr16:27469463|27470124 hsa-miR-3141 1 0 0
chr16:27469463|27470124 hsa-miR-3154 1 0 0
chr16:27469463|27470124 hsa-miR-3175 1 0 0
chr16:27469463|27470124 hsa-miR-4271 1 0 0
chr16:27469463|27470124 hsa-miR-4278 1 0 0
chr16:27469463|27470124 hsa-miR-3652 1 0 0
chr16:27469463|27470124 hsa-miR-4488 1 1 0
chr16:27469463|27470124 hsa-miR-2392 1 0 0
chr16:27469463|27470124 hsa-miR-4507 1 0 0
chr16:27469463|27470124 hsa-miR-4510 1 0 0
chr16:27469463|27470124 hsa-miR-4533 1 1 0
chr16:27469463|27470124 hsa-miR-4538 1 1 0
chr16:27469463|27470124 hsa-miR-4651 1 0 0
chr16:27469463|27470124 hsa-miR-4689 1 0 0
chr16:27469463|27470124 hsa-miR-4737 1 0 0
chr16:27469463|27470124 hsa-miR-4739 1 0 0
chr16:27469463|27470124 hsa-miR-6088 1 0 0
chr16:27469463|27470124 hsa-miR-6090 1 0 0
chr16:27469463|27470124 hsa-miR-6127 1 0 0
chr16:27469463|27470124 hsa-miR-9986 1 0 0
chr16:27469463|27470124 hsa-miR-4433b-3p 1 0 0
chr16:27469463|27470124 hsa-miR-6809-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6765-5p 1 0 0
chr16:27469463|27470124 hsa-miR-7106-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6825-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6894-5p 1 1 0
chr16:27469463|27470124 hsa-miR-6799-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6804-5p 1 0 0
chr16:27469463|27470124 hsa-miR-5187-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6515-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6880-5p 1 0 0
chr16:27469463|27470124 hsa-miR-7847-3p 1 1 0
chr16:27469463|27470124 hsa-miR-4695-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6744-5p 1 1 0
chr16:27469463|27470124 hsa-miR-4709-3p 1 0 0
chr16:27469463|27470124 hsa-miR-6890-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6820-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6721-5p 1 0 0
chr16:27469463|27470124 hsa-miR-3605-5p 1 1 0
chr16:27469463|27470124 hsa-miR-3180-3p 1 0 0
chr16:27469463|27470124 hsa-miR-6748-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6772-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6796-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6732-5p 1 0 0
chr16:27469463|27470124 hsa-miR-656-5p 1 0 0
chr16:27469463|27470124 hsa-miR-3190-3p 1 0 0
chr16:27469463|27470124 hsa-miR-6805-5p 1 1 0
chr16:27469463|27470124 hsa-miR-6798-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6782-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6810-5p 1 0 0
chr16:27469463|27470124 hsa-miR-1226-5p 1 0 0
chr16:27469463|27470124 hsa-miR-1229-5p 1 0 0
chr16:27469463|27470124 hsa-miR-3691-5p 1 0 0
chr16:27469463|27470124 hsa-miR-885-3p 1 0 0
chr16:27469463|27470124 hsa-miR-6771-5p 1 0 0
chr16:27469463|27470124 hsa-miR-149-3p 1 1 0
chr16:27469463|27470124 hsa-miR-6824-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6789-5p 1 0 0
chr16:27469463|27470124 hsa-miR-5010-5p 1 0 0
chr16:27469463|27470124 hsa-miR-135b-3p 1 0 0
chr16:27469463|27470124 hsa-miR-1207-5p 1 0 0
chr16:27469463|27470124 hsa-miR-1233-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6769b-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6778-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6812-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6816-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6870-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6737-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6756-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6803-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6842-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6851-5p 1 0 0
chr16:27469463|27470124 hsa-miR-7107-5p 1 1 0
chr16:27469463|27470124 hsa-miR-10401-5p 1 0 0
chr16:27469463|27470124 hsa-miR-11181-3p 1 0 0
chr16:27469463|27470124 hsa-miR-1249-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6751-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6763-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6774-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6779-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6780a-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6797-5p 1 0 0
chr16:27469463|27470124 hsa-miR-7111-5p 1 0 0
chr16:27469463|27470124 hsa-miR-4728-5p 1 0 0
chr16:27469463|27470124 hsa-miR-5196-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6780b-5p 1 1 0
chr16:27469463|27470124 hsa-miR-1237-5p 1 1 0
chr16:27469463|27470124 hsa-miR-328-5p 1 0 0
chr16:27469463|27470124 hsa-miR-4632-5p 1 0 0
chr16:27469463|27470124 hsa-miR-4649-5p 1 0 0
chr16:27469463|27470124 hsa-miR-4725-3p 1 1 0
chr16:27469463|27470124 hsa-miR-6729-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6794-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6846-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6848-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6858-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6883-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6885-5p 1 0 0
chr16:27469463|27470124 hsa-miR-3940-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6856-5p 1 0 0
chr16:27469463|27470124 hsa-miR-4665-5p 1 0 0
chr16:27469463|27470124 hsa-miR-3116 0 1 0
chr16:27469463|27470124 hsa-miR-3173-3p 1 0 0
chr16:27469463|27470124 hsa-miR-3679-5p 1 0 0
chr16:27469463|27470124 hsa-miR-4747-5p 1 1 0
chr16:27469463|27470124 hsa-miR-6876-5p 1 0 0
chr16:27469463|27470124 hsa-miR-4716-3p 1 0 0
chr16:27469463|27470124 hsa-miR-6785-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6762-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6859-5p 1 0 0
chr16:27469463|27470124 hsa-miR-6884-5p 1 0 0
chr16:27469463|27470124 hsa-miR-135a-2-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:27469463|27470124
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MLRRLPPTPSSKSSSSSSSSSRLPSFPKLLMTS
Nucleotide Sequence ATGCTCCGGCGCTTGCCCCCTACACCTTCGTCCAAGTCATCCTCTTCATCCTCGTCATCCTCCAGGCTGCCGTCCTTCCCCAAGCTTTTGATGACCTCA
CircID chr16:27469463|27470124
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MGKDGSLEDDEDEEDDLDEGVGGKRRSME
Nucleotide Sequence TTGGGGAAGGACGGCAGCCTGGAGGATGACGAGGATGAAGAGGATGACTTGGACGAAGGTGTAGGGGGCAAGCGCCGGAGCATGGAG
CircID chr16:27469463|27470124
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MRSSKAWGRTAAWRMTRMKRMTWTKV
Nucleotide Sequence ATGAGGTCATCAAAAGCTTGGGGAAGGACGGCAGCCTGGAGGATGACGAGGATGAAGAGGATGACTTGGACGAAGGTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab