CircRNA Information

General Information
circRNA Basic Information
CircID chr16:2765992|2766171
Strand -
CircType exon
Host Gene ENSG00000167978.15;
Algorism CIRI2;
Sequence TCAAGGTCACCTGCCCGGCAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACCAGTCGGAAGCGTTCTCGCTCACGCACATCACCAGCCCCGTGGAAACGCTCTAGATCTCGAGCCTCTCCAGCCACTCACCGGCGATCCAGGTCCAGAACCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:2765992|2766171 hsa-miR-210-5p 0 0 1
chr16:2765992|2766171 hsa-miR-210-3p 0 0 1
chr16:2765992|2766171 hsa-miR-185-5p 0 0 1
chr16:2765992|2766171 hsa-miR-185-3p 0 0 1
chr16:2765992|2766171 hsa-miR-422a 0 0 1
chr16:2765992|2766171 hsa-miR-492 0 0 1
chr16:2765992|2766171 hsa-miR-619-5p 0 0 1
chr16:2765992|2766171 hsa-miR-619-3p 0 0 1
chr16:2765992|2766171 hsa-miR-631 0 0 1
chr16:2765992|2766171 hsa-miR-1299 0 0 1
chr16:2765992|2766171 hsa-miR-1275 0 0 1
chr16:2765992|2766171 hsa-miR-125a-3p 0 0 1
chr16:2765992|2766171 hsa-miR-518d-5p 0 0 1
chr16:2765992|2766171 hsa-miR-519b-5p 0 0 1
chr16:2765992|2766171 hsa-miR-519c-5p 0 0 1
chr16:2765992|2766171 hsa-miR-520c-5p 0 0 1
chr16:2765992|2766171 hsa-miR-378 0 0 1
chr16:2765992|2766171 hsa-miR-138 0 0 1
chr16:2765992|2766171 hsa-miR-516b 0 0 1
chr16:2765992|2766171 hsa-miR-526a 0 0 1
chr16:2765992|2766171 hsa-miR-608 1 0 0
chr16:2765992|2766171 hsa-miR-638 1 1 0
chr16:2765992|2766171 hsa-miR-663a 1 0 0
chr16:2765992|2766171 hsa-miR-762 1 0 0
chr16:2765992|2766171 hsa-miR-1469 1 0 0
chr16:2765992|2766171 hsa-miR-2861 1 0 0
chr16:2765992|2766171 hsa-miR-378b 1 0 0
chr16:2765992|2766171 hsa-miR-3188 1 0 0
chr16:2765992|2766171 hsa-miR-378c 1 1 0
chr16:2765992|2766171 hsa-miR-3652 1 1 0
chr16:2765992|2766171 hsa-miR-3659 1 0 0
chr16:2765992|2766171 hsa-miR-3661 0 1 0
chr16:2765992|2766171 hsa-miR-1268b 1 0 0
chr16:2765992|2766171 hsa-miR-378e 1 0 0
chr16:2765992|2766171 hsa-miR-378f 1 0 0
chr16:2765992|2766171 hsa-miR-4430 1 0 0
chr16:2765992|2766171 hsa-miR-4440 1 0 0
chr16:2765992|2766171 hsa-miR-4489 1 0 0
chr16:2765992|2766171 hsa-miR-4492 1 0 0
chr16:2765992|2766171 hsa-miR-4498 1 0 0
chr16:2765992|2766171 hsa-miR-4507 1 0 0
chr16:2765992|2766171 hsa-miR-4508 1 1 0
chr16:2765992|2766171 hsa-miR-4523 1 0 0
chr16:2765992|2766171 hsa-miR-4533 1 0 0
chr16:2765992|2766171 hsa-miR-4535 0 1 0
chr16:2765992|2766171 hsa-miR-1587 1 0 0
chr16:2765992|2766171 hsa-miR-4651 1 0 0
chr16:2765992|2766171 hsa-miR-4656 1 0 0
chr16:2765992|2766171 hsa-miR-4669 1 1 0
chr16:2765992|2766171 hsa-miR-4674 1 0 0
chr16:2765992|2766171 hsa-miR-4736 0 1 0
chr16:2765992|2766171 hsa-miR-4739 1 0 0
chr16:2765992|2766171 hsa-miR-4741 1 0 0
chr16:2765992|2766171 hsa-miR-5090 1 0 0
chr16:2765992|2766171 hsa-miR-5787 1 0 0
chr16:2765992|2766171 hsa-miR-6085 1 0 0
chr16:2765992|2766171 hsa-miR-6132 1 0 0
chr16:2765992|2766171 hsa-miR-138-5p 1 1 0
chr16:2765992|2766171 hsa-miR-134-5p 1 0 0
chr16:2765992|2766171 hsa-miR-370-3p 1 0 0
chr16:2765992|2766171 hsa-miR-6747-5p 0 1 0
chr16:2765992|2766171 hsa-miR-7106-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6746-5p 1 0 0
chr16:2765992|2766171 hsa-miR-4474-3p 1 0 0
chr16:2765992|2766171 hsa-miR-8069 1 0 0
chr16:2765992|2766171 hsa-miR-6748-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6829-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6732-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6786-5p 1 1 0
chr16:2765992|2766171 hsa-miR-6835-5p 1 0 0
chr16:2765992|2766171 hsa-miR-3944-3p 1 0 0
chr16:2765992|2766171 hsa-miR-1229-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6784-5p 1 0 0
chr16:2765992|2766171 hsa-miR-4640-5p 1 0 0
chr16:2765992|2766171 hsa-miR-296-3p 1 0 0
chr16:2765992|2766171 hsa-miR-6771-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6749-5p 1 0 0
chr16:2765992|2766171 hsa-miR-4787-5p 1 0 0
chr16:2765992|2766171 hsa-miR-4446-3p 1 0 0
chr16:2765992|2766171 hsa-miR-6824-5p 1 0 0
chr16:2765992|2766171 hsa-miR-4776-5p 1 0 0
chr16:2765992|2766171 hsa-miR-574-5p 1 0 0
chr16:2765992|2766171 hsa-miR-7152-3p 1 0 0
chr16:2765992|2766171 hsa-miR-1180-3p 0 1 0
chr16:2765992|2766171 hsa-miR-2277-5p 1 0 0
chr16:2765992|2766171 hsa-miR-4763-3p 1 0 0
chr16:2765992|2766171 hsa-miR-6769b-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6775-5p 1 0 0
chr16:2765992|2766171 hsa-miR-5001-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6752-5p 1 1 0
chr16:2765992|2766171 hsa-miR-6756-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6803-5p 1 1 0
chr16:2765992|2766171 hsa-miR-6813-5p 1 0 0
chr16:2765992|2766171 hsa-miR-7107-5p 1 0 0
chr16:2765992|2766171 hsa-miR-7110-5p 1 1 0
chr16:2765992|2766171 hsa-miR-6751-5p 1 1 0
chr16:2765992|2766171 hsa-miR-6763-5p 1 0 0
chr16:2765992|2766171 hsa-miR-3620-5p 1 0 0
chr16:2765992|2766171 hsa-miR-10396a-5p 1 0 0
chr16:2765992|2766171 hsa-miR-10396b-5p 1 0 0
chr16:2765992|2766171 hsa-miR-4701-3p 1 0 0
chr16:2765992|2766171 hsa-miR-4745-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6729-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6846-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6848-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6858-5p 1 0 0
chr16:2765992|2766171 hsa-miR-4758-5p 1 1 0
chr16:2765992|2766171 hsa-miR-365a-5p 0 1 0
chr16:2765992|2766171 hsa-miR-3940-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6856-5p 1 0 0
chr16:2765992|2766171 hsa-miR-378a-3p 1 0 0
chr16:2765992|2766171 hsa-miR-6790-5p 1 0 0
chr16:2765992|2766171 hsa-miR-6724-5p 1 0 0
chr16:2765992|2766171 hsa-miR-2682-3p 0 1 0
chr16:2765992|2766171 hsa-miR-6791-5p 1 0 0
chr16:2765992|2766171 hsa-miR-4757-5p 0 1 0
chr16:2765992|2766171 hsa-miR-330-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:2765992|2766171
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MPGRKVPGPPLDAEEAALGHPQPVGSVLAHAHHQPRGNALDLEPLQPLTGDPGPEP
Nucleotide Sequence CTGCCCGGCAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACCAGTCGGAAGCGTTCTCGCTCACGCACATCACCAGCCCCGTGGAAACGCTCTAGATCTCGAGCCTCTCCAGCCACTCACCGGCGATCCAGGTCCAGAACCC
CircID chr16:2765992|2766171
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MVGGVRERPLRRREEVRELSCRAGDL
Nucleotide Sequence CTGGTTGGGGGTGTCCGAGAGCGGCCTCTTCGGCGTCGAGAGGAGGTCCGGGAACTTTCCTGCCGGGCAGGTGACCTT
CircID chr16:2765992|2766171
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MVMCVSENASDWLGVSESGLFGVERRSGNFPAGQVTL
Nucleotide Sequence CTGGTGATGTGCGTGAGCGAGAACGCTTCCGACTGGTTGGGGGTGTCCGAGAGCGGCCTCTTCGGCGTCGAGAGGAGGTCCGGGAACTTTCCTGCCGGGCAGGTGACCTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab