CircRNA Information

General Information
circRNA Basic Information
CircID chr16:2766693|2767009
Strand +
CircType exon
Host Gene ENSG00000167978.15;
Algorism CIRI2;
Sequence CTGGACCATCCATCATGGAGCCGCCGGCTTGCTGCAGGACAGACATGGGTGTTCTAGAGCTGCCAAGGGGTTCAAGCATTCCAGGTGATCTGCAGCGATCAAGAGGTGTTGGGGACATGCTAGGACGACTGAAGCAGCTCATTCTGGAACTGTTGAGTGCTACTGGAGGTGTCCGTGAACCAGAATGATTTCTTGTTGCTGGAGGAGTAGCAGATCGTGAACGATCAGAACTACTTCCAGATGCAGAACGCCTGCGGATGGCTGGAGGAGATCTTGTTAAGGACCGTTTACCCCGAGCTGTTCGTGGAGTACGGGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:2766693|2767009 hsa-miR-107 0 0 1
chr16:2766693|2767009 hsa-miR-206 0 0 1
chr16:2766693|2767009 hsa-miR-553 0 0 1
chr16:2766693|2767009 hsa-miR-558 0 0 1
chr16:2766693|2767009 hsa-miR-613 0 0 1
chr16:2766693|2767009 hsa-miR-619-5p 0 0 1
chr16:2766693|2767009 hsa-miR-619-3p 0 0 1
chr16:2766693|2767009 hsa-miR-639 0 1 1
chr16:2766693|2767009 hsa-miR-421 0 0 1
chr16:2766693|2767009 hsa-miR-766-5p 0 0 1
chr16:2766693|2767009 hsa-miR-766-3p 0 0 1
chr16:2766693|2767009 hsa-miR-1299 0 0 1
chr16:2766693|2767009 hsa-miR-770-5p 0 0 1
chr16:2766693|2767009 hsa-miR-885-3p 0 0 1
chr16:2766693|2767009 hsa-miR-1184 0 1 1
chr16:2766693|2767009 hsa-miR-525-5p 0 0 1
chr16:2766693|2767009 hsa-miR-508-5p 0 0 1
chr16:2766693|2767009 hsa-miR-654-3p 0 0 1
chr16:2766693|2767009 hsa-miR-875-3p 0 0 1
chr16:2766693|2767009 hsa-miR-1244 0 1 1
chr16:2766693|2767009 hsa-miR-556-5p 0 0 1
chr16:2766693|2767009 hsa-miR-338-3p 0 0 1
chr16:2766693|2767009 hsa-miR-520a-5p 0 0 1
chr16:2766693|2767009 hsa-miR-103 0 0 1
chr16:2766693|2767009 hsa-miR-1 0 0 1
chr16:2766693|2767009 hsa-miR-544 0 0 1
chr16:2766693|2767009 hsa-miR-802 0 1 0
chr16:2766693|2767009 hsa-miR-3937 1 0 0
chr16:2766693|2767009 hsa-miR-4660 0 1 0
chr16:2766693|2767009 hsa-miR-4686 0 1 0
chr16:2766693|2767009 hsa-miR-187-3p 0 1 0
chr16:2766693|2767009 hsa-miR-196a-3p 0 1 0
chr16:2766693|2767009 hsa-miR-4731-5p 1 0 0
chr16:2766693|2767009 hsa-miR-212-5p 0 1 0
chr16:2766693|2767009 hsa-miR-6720-5p 0 1 0
chr16:2766693|2767009 hsa-miR-7161-3p 0 1 0
chr16:2766693|2767009 hsa-miR-4638-3p 1 0 0
chr16:2766693|2767009 hsa-miR-584-3p 0 1 0
chr16:2766693|2767009 hsa-miR-6793-3p 0 1 0
chr16:2766693|2767009 hsa-miR-1288-5p 0 1 0
chr16:2766693|2767009 hsa-miR-382-3p 0 1 0
chr16:2766693|2767009 hsa-miR-6792-3p 0 1 0
chr16:2766693|2767009 hsa-miR-6512-3p 0 1 0
chr16:2766693|2767009 hsa-miR-4691-5p 1 1 0
chr16:2766693|2767009 hsa-miR-3619-5p 0 1 0
chr16:2766693|2767009 hsa-miR-1301-5p 0 1 0
chr16:2766693|2767009 hsa-miR-6874-3p 0 1 0
chr16:2766693|2767009 hsa-miR-6834-3p 0 1 0
chr16:2766693|2767009 hsa-miR-6502-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:2766693|2767009
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MQNACGWLEEILLRTVYPELFVEYG
Nucleotide Sequence ATGCAGAACGCCTGCGGATGGCTGGAGGAGATCTTGTTAAGGACCGTTTACCCCGAGCTGTTCGTGGAGTACGGG
CircID chr16:2766693|2767009
ORF Type ORF2
Protein Length 57
Nucleotide Length 174
Protein Sequence MEPPACCRTDMGVLELPRGSSIPGDLQRSRGVGDMLGRLKQLILELLSATGGVREPE
Nucleotide Sequence ATGGAGCCGCCGGCTTGCTGCAGGACAGACATGGGTGTTCTAGAGCTGCCAAGGGGTTCAAGCATTCCAGGTGATCTGCAGCGATCAAGAGGTGTTGGGGACATGCTAGGACGACTGAAGCAGCTCATTCTGGAACTGTTGAGTGCTACTGGAGGTGTCCGTGAACCAGAATGA
CircID chr16:2766693|2767009
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGGSMMDGP
Nucleotide Sequence ATGAGCTGCTTCAGTCGTCCTAGCATGTCCCCAACACCTCTTGATCGCTGCAGATCACCTGGAATGCTTGAACCCCTTGGCAGCTCTAGAACACCCATGTCTGTCCTGCAGCAAGCCGGCGGCTCCATGATGGATGGTCCA
CircID chr16:2766693|2767009
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MHLEVVLIVHDLLLLQQQEIILVHGHLQ
Nucleotide Sequence CTGCATCTGGAAGTAGTTCTGATCGTTCACGATCTGCTACTCCTCCAGCAACAAGAAATCATTCTGGTTCACGGACACCTCCAGTAG
CircID chr16:2766693|2767009
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MIAADHLECLNPLAALEHPCLSCSKPAAP
Nucleotide Sequence TTGATCGCTGCAGATCACCTGGAATGCTTGAACCCCTTGGCAGCTCTAGAACACCCATGTCTGTCCTGCAGCAAGCCGGCGGCTCCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab