CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28106112|28106417
Strand -
CircType exon
Host Gene ENSG00000169180.10;
Algorism CIRI2;
Sequence CTGGCCTGGCTCCTGGACCACCACCTGCAGGATCTTCAGAAACTTCTCCACCACCCGGCAGCCTGTGCTGCCCTCGTGGAGGATGCTCTCGGCTAACTGCTCTCTACAGAGGAGAAAGCCACACAGTGAGCAACCACATGTTTCTCTGGGGGCCAGCATGAAAACCCATGCTGTGGCAAGTGCAGAACAGGAGCAAAAAGCCACACTTTGTCGCCAGACCCACCACTTCTCCCTTGAATCTGAAAACTATAGATGGTGGGTCTGTGCTTACCTGGTAAACATGTTGAGGAAAGTCTGTATGATTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28106112|28106417 hsa-miR-487a-5p 0 0 1
chr16:28106112|28106417 hsa-miR-487a-3p 0 0 1
chr16:28106112|28106417 hsa-miR-494-5p 0 0 1
chr16:28106112|28106417 hsa-miR-494-3p 0 0 1
chr16:28106112|28106417 hsa-miR-520g-5p 0 0 1
chr16:28106112|28106417 hsa-miR-520g-3p 0 0 1
chr16:28106112|28106417 hsa-miR-520h 0 0 1
chr16:28106112|28106417 hsa-miR-595 0 0 1
chr16:28106112|28106417 hsa-miR-629-5p 0 0 1
chr16:28106112|28106417 hsa-miR-629-3p 0 0 1
chr16:28106112|28106417 hsa-miR-657 0 0 1
chr16:28106112|28106417 hsa-miR-892a 0 1 1
chr16:28106112|28106417 hsa-miR-541-5p 0 0 1
chr16:28106112|28106417 hsa-miR-541-3p 0 0 1
chr16:28106112|28106417 hsa-miR-665 0 1 1
chr16:28106112|28106417 hsa-miR-1178-5p 0 0 1
chr16:28106112|28106417 hsa-miR-1178-3p 0 0 1
chr16:28106112|28106417 hsa-miR-1238-5p 0 0 1
chr16:28106112|28106417 hsa-miR-1238-3p 0 0 1
chr16:28106112|28106417 hsa-miR-1205 0 0 1
chr16:28106112|28106417 hsa-miR-1208 0 0 1
chr16:28106112|28106417 hsa-miR-1293 1 1 1
chr16:28106112|28106417 hsa-miR-129-5p 0 1 1
chr16:28106112|28106417 hsa-miR-193a-5p 0 0 1
chr16:28106112|28106417 hsa-miR-654-5p 0 0 1
chr16:28106112|28106417 hsa-miR-361-3p 0 0 1
chr16:28106112|28106417 hsa-miR-876-3p 0 0 1
chr16:28106112|28106417 hsa-miR-485-3p 1 1 1
chr16:28106112|28106417 hsa-miR-323-5p 0 0 1
chr16:28106112|28106417 hsa-miR-1308 0 0 1
chr16:28106112|28106417 hsa-miR-644 0 0 1
chr16:28106112|28106417 hsa-miR-544 0 0 1
chr16:28106112|28106417 hsa-miR-1273 0 0 1
chr16:28106112|28106417 hsa-miR-147 0 0 1
chr16:28106112|28106417 hsa-miR-544a 0 1 0
chr16:28106112|28106417 hsa-miR-644a 0 1 0
chr16:28106112|28106417 hsa-miR-1183 1 0 0
chr16:28106112|28106417 hsa-miR-4325 0 1 0
chr16:28106112|28106417 hsa-miR-3943 1 0 0
chr16:28106112|28106417 hsa-miR-4516 0 1 0
chr16:28106112|28106417 hsa-miR-4531 0 1 0
chr16:28106112|28106417 hsa-miR-4688 1 0 0
chr16:28106112|28106417 hsa-miR-4734 1 0 0
chr16:28106112|28106417 hsa-miR-5703 0 1 0
chr16:28106112|28106417 hsa-miR-12127 1 0 0
chr16:28106112|28106417 hsa-miR-26b-3p 0 1 0
chr16:28106112|28106417 hsa-miR-370-3p 1 0 0
chr16:28106112|28106417 hsa-miR-323a-5p 1 1 0
chr16:28106112|28106417 hsa-miR-1273h-3p 1 0 0
chr16:28106112|28106417 hsa-miR-505-5p 0 1 0
chr16:28106112|28106417 hsa-miR-6760-5p 0 1 0
chr16:28106112|28106417 hsa-miR-4793-3p 0 1 0
chr16:28106112|28106417 hsa-miR-6772-3p 1 1 0
chr16:28106112|28106417 hsa-miR-1226-5p 1 1 0
chr16:28106112|28106417 hsa-miR-3616-3p 0 1 0
chr16:28106112|28106417 hsa-miR-3162-5p 0 1 0
chr16:28106112|28106417 hsa-miR-3678-3p 1 0 0
chr16:28106112|28106417 hsa-miR-3191-3p 1 0 0
chr16:28106112|28106417 hsa-miR-6832-5p 0 1 0
chr16:28106112|28106417 hsa-miR-7113-5p 0 1 0
chr16:28106112|28106417 hsa-miR-3124-3p 0 1 0
chr16:28106112|28106417 hsa-miR-135a-5p 0 1 0
chr16:28106112|28106417 hsa-miR-6839-3p 0 1 0
chr16:28106112|28106417 hsa-miR-6769b-5p 0 1 0
chr16:28106112|28106417 hsa-miR-6756-5p 1 0 0
chr16:28106112|28106417 hsa-miR-6769a-5p 0 1 0
chr16:28106112|28106417 hsa-miR-6803-5p 1 0 0
chr16:28106112|28106417 hsa-miR-6851-5p 1 1 0
chr16:28106112|28106417 hsa-miR-6879-5p 0 1 0
chr16:28106112|28106417 hsa-miR-328-5p 1 0 0
chr16:28106112|28106417 hsa-miR-4632-5p 1 1 0
chr16:28106112|28106417 hsa-miR-6735-5p 0 1 0
chr16:28106112|28106417 hsa-miR-7843-5p 0 1 0
chr16:28106112|28106417 hsa-miR-10394-5p 1 1 0
chr16:28106112|28106417 hsa-miR-4691-5p 0 1 0
chr16:28106112|28106417 hsa-miR-154-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:28106112|28106417
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence LAWLLDHHLQDLQKLLHHPAACAALVEDALG
Nucleotide Sequence CTGGCCTGGCTCCTGGACCACCACCTGCAGGATCTTCAGAAACTTCTCCACCACCCGGCAGCCTGTGCTGCCCTCGTGGAGGATGCTCTCGGCTAA
CircID chr16:28106112|28106417
ORF Type ORF2
Protein Length 79
Nucleotide Length 237
Protein Sequence MPSWRMLSANCSLQRRKPHSEQPHVSLGASMKTHAVASAEQEQKATLCRQTHHFSLESENYRWWVCAYLVNMLRKVCMI
Nucleotide Sequence CTGCCCTCGTGGAGGATGCTCTCGGCTAACTGCTCTCTACAGAGGAGAAAGCCACACAGTGAGCAACCACATGTTTCTCTGGGGGCCAGCATGAAAACCCATGCTGTGGCAAGTGCAGAACAGGAGCAAAAAGCCACACTTTGTCGCCAGACCCACCACTTCTCCCTTGAATCTGAAAACTATAGATGGTGGGTCTGTGCTTACCTGGTAAACATGTTGAGGAAAGTCTGTATGATT
CircID chr16:28106112|28106417
ORF Type ORF3
Protein Length 51
Nucleotide Length 156
Protein Sequence MAPGPPPAGSSETSPPPGSLCCPRGGCSRLTALYRGESHTVSNHMFLWGPA
Nucleotide Sequence CTGGCTCCTGGACCACCACCTGCAGGATCTTCAGAAACTTCTCCACCACCCGGCAGCCTGTGCTGCCCTCGTGGAGGATGCTCTCGGCTAACTGCTCTCTACAGAGGAGAAAGCCACACAGTGAGCAACCACATGTTTCTCTGGGGGCCAGCATGA
CircID chr16:28106112|28106417
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MLWQVQNRSKKPHFVARPTTSPLNLKTIDGGSVLTW
Nucleotide Sequence ATGCTGTGGCAAGTGCAGAACAGGAGCAAAAAGCCACACTTTGTCGCCAGACCCACCACTTCTCCCTTGAATCTGAAAACTATAGATGGTGGGTCTGTGCTTACCTGGTAA
CircID chr16:28106112|28106417
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MLAPRETCGCSLCGFLLCREQLAESILHEGSTGCRVVEKFLKILQVVVQEPGQ
Nucleotide Sequence ATGCTGGCCCCCAGAGAAACATGTGGTTGCTCACTGTGTGGCTTTCTCCTCTGTAGAGAGCAGTTAGCCGAGAGCATCCTCCACGAGGGCAGCACAGGCTGCCGGGTGGTGGAGAAGTTTCTGAAGATCCTGCAGGTGGTGGTCCAGGAGCCAGGCCAG
CircID chr16:28106112|28106417
ORF Type ORF6
Protein Length 30
Nucleotide Length 93
Protein Sequence MHLPQHGFSCWPPEKHVVAHCVAFSSVESS
Nucleotide Sequence CTGCACTTGCCACAGCATGGGTTTTCATGCTGGCCCCCAGAGAAACATGTGGTTGCTCACTGTGTGGCTTTCTCCTCTGTAGAGAGCAGTTAG
CircID chr16:28106112|28106417
ORF Type ORF7
Protein Length 37
Nucleotide Length 114
Protein Sequence MATKCGFLLLFCTCHSMGFHAGPQRNMWLLTVWLSPL
Nucleotide Sequence CTGGCGACAAAGTGTGGCTTTTTGCTCCTGTTCTGCACTTGCCACAGCATGGGTTTTCATGCTGGCCCCCAGAGAAACATGTGGTTGCTCACTGTGTGGCTTTCTCCTCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab