CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28322306|28322603
Strand +
CircType exon
Host Gene ENSG00000188322.4;
Algorism CIRI2;
Sequence TGTTTGTAAACTGGACCCGGGCAGGGCAGGGGACCTATAGCCCTTTTTCAAGGTGGGAATGAGTGGGGAGTGGAGAGGTTGGGGCACCAGCCAGAAAGTGCTCGGAGTTCACTCTGGCCGGCCTGGCCCATCAAAGAGCCCCTCAAATGGCCCAGAACCCCAGGAGGGACCCTGGCAGGGGACCCTGACAGGGACAGCCTCACCCATGTGGTGCTTATTGCGGGGGTCCCGGGCCTCCACAGAGAGGGGCAGGGGGTCAGGCGGGGCTGCTGTTGTCTCTGTTTTGCTACCTGGGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28322306|28322603 hsa-miR-29a-5p 0 0 1
chr16:28322306|28322603 hsa-miR-29a-3p 0 0 1
chr16:28322306|28322603 hsa-miR-149-5p 0 0 1
chr16:28322306|28322603 hsa-miR-149-3p 0 0 1
chr16:28322306|28322603 hsa-miR-29c-5p 0 0 1
chr16:28322306|28322603 hsa-miR-29c-3p 0 0 1
chr16:28322306|28322603 hsa-miR-612 1 0 1
chr16:28322306|28322603 hsa-miR-650 0 0 1
chr16:28322306|28322603 hsa-miR-874-5p 0 0 1
chr16:28322306|28322603 hsa-miR-874-3p 0 0 1
chr16:28322306|28322603 hsa-miR-1304-5p 0 0 1
chr16:28322306|28322603 hsa-miR-1304-3p 0 0 1
chr16:28322306|28322603 hsa-miR-1262 0 0 1
chr16:28322306|28322603 hsa-miR-548p 0 0 1
chr16:28322306|28322603 hsa-miR-145-5p 0 0 1
chr16:28322306|28322603 hsa-miR-615-3p 0 0 1
chr16:28322306|28322603 hsa-miR-485-5p 0 0 1
chr16:28322306|28322603 hsa-miR-146b-3p 0 0 1
chr16:28322306|28322603 hsa-miR-339-5p 1 0 1
chr16:28322306|28322603 hsa-miR-423-5p 0 0 1
chr16:28322306|28322603 hsa-miR-361-3p 0 0 1
chr16:28322306|28322603 hsa-miR-1224-3p 0 0 1
chr16:28322306|28322603 hsa-miR-331-3p 0 0 1
chr16:28322306|28322603 hsa-miR-188-3p 0 0 1
chr16:28322306|28322603 hsa-miR-524-5p 0 0 1
chr16:28322306|28322603 hsa-miR-324-3p 1 0 1
chr16:28322306|28322603 hsa-miR-520d-5p 0 0 1
chr16:28322306|28322603 hsa-miR-1260 0 0 1
chr16:28322306|28322603 hsa-miR-1274a 0 0 1
chr16:28322306|28322603 hsa-miR-1280 0 0 1
chr16:28322306|28322603 hsa-miR-1274b 0 0 1
chr16:28322306|28322603 hsa-miR-1308 0 0 1
chr16:28322306|28322603 hsa-miR-138 0 0 1
chr16:28322306|28322603 hsa-miR-1285 0 0 1
chr16:28322306|28322603 hsa-miR-29b 0 0 1
chr16:28322306|28322603 hsa-miR-661 1 0 0
chr16:28322306|28322603 hsa-miR-760 1 0 0
chr16:28322306|28322603 hsa-miR-1538 1 0 0
chr16:28322306|28322603 hsa-miR-4274 1 0 0
chr16:28322306|28322603 hsa-miR-3615 1 0 0
chr16:28322306|28322603 hsa-miR-4449 1 0 0
chr16:28322306|28322603 hsa-miR-4486 1 0 0
chr16:28322306|28322603 hsa-miR-4741 1 0 0
chr16:28322306|28322603 hsa-miR-5194 1 0 0
chr16:28322306|28322603 hsa-miR-6860 1 0 0
chr16:28322306|28322603 hsa-miR-8089 1 0 0
chr16:28322306|28322603 hsa-miR-6749-3p 1 0 0
chr16:28322306|28322603 hsa-miR-7155-5p 1 0 0
chr16:28322306|28322603 hsa-miR-210-5p 1 0 0
chr16:28322306|28322603 hsa-miR-3663-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6089 1 0 0
chr16:28322306|28322603 hsa-miR-1225-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6842-3p 1 0 0
chr16:28322306|28322603 hsa-miR-3189-5p 1 0 0
chr16:28322306|28322603 hsa-miR-1915-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6845-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6796-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6788-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6716-3p 1 0 0
chr16:28322306|28322603 hsa-miR-4436b-5p 1 0 0
chr16:28322306|28322603 hsa-miR-615-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6852-5p 1 0 0
chr16:28322306|28322603 hsa-miR-1226-5p 1 0 0
chr16:28322306|28322603 hsa-miR-4763-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6763-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6784-5p 1 0 0
chr16:28322306|28322603 hsa-miR-4640-5p 1 0 0
chr16:28322306|28322603 hsa-miR-7113-3p 1 0 0
chr16:28322306|28322603 hsa-miR-4717-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6821-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6861-3p 1 0 0
chr16:28322306|28322603 hsa-miR-378a-5p 1 0 0
chr16:28322306|28322603 hsa-miR-4640-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6895-5p 1 0 0
chr16:28322306|28322603 hsa-miR-4732-3p 1 0 0
chr16:28322306|28322603 hsa-miR-4758-3p 1 0 0
chr16:28322306|28322603 hsa-miR-744-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6758-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6826-3p 1 0 0
chr16:28322306|28322603 hsa-miR-1914-5p 1 0 0
chr16:28322306|28322603 hsa-miR-4749-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6859-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6777-3p 1 0 0
chr16:28322306|28322603 hsa-miR-4433a-5p 1 0 0
chr16:28322306|28322603 hsa-miR-1229-3p 1 0 0
chr16:28322306|28322603 hsa-miR-4750-3p 1 0 0
chr16:28322306|28322603 hsa-miR-3173-5p 1 0 0
chr16:28322306|28322603 hsa-miR-4433b-5p 1 0 0
chr16:28322306|28322603 hsa-miR-3162-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6743-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6756-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6813-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6819-5p 1 0 0
chr16:28322306|28322603 hsa-miR-5189-5p 1 0 0
chr16:28322306|28322603 hsa-miR-10396a-5p 1 0 0
chr16:28322306|28322603 hsa-miR-328-5p 1 0 0
chr16:28322306|28322603 hsa-miR-4726-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6729-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6846-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6848-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6885-5p 1 0 0
chr16:28322306|28322603 hsa-miR-10396a-3p 1 0 0
chr16:28322306|28322603 hsa-miR-10396b-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6799-3p 1 0 0
chr16:28322306|28322603 hsa-miR-3184-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6724-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6791-5p 1 0 0
chr16:28322306|28322603 hsa-miR-6801-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6810-3p 1 0 0
chr16:28322306|28322603 hsa-miR-10392-3p 1 0 0
chr16:28322306|28322603 hsa-miR-483-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6819-3p 1 0 0
chr16:28322306|28322603 hsa-miR-6823-3p 1 0 0
chr16:28322306|28322603 hsa-miR-1234-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:28322306|28322603
ORF Type ORF1
Protein Length 73
Nucleotide Length 219
Protein Sequence MGHQPESARSSLWPAWPIKEPLKWPRTPGGTLAGDPDRDSLTHVVLIAGVPGLHREGQGVRRGCCCLCFATWG
Nucleotide Sequence TTGGGGCACCAGCCAGAAAGTGCTCGGAGTTCACTCTGGCCGGCCTGGCCCATCAAAGAGCCCCTCAAATGGCCCAGAACCCCAGGAGGGACCCTGGCAGGGGACCCTGACAGGGACAGCCTCACCCATGTGGTGCTTATTGCGGGGGTCCCGGGCCTCCACAGAGAGGGGCAGGGGGTCAGGCGGGGCTGCTGTTGTCTCTGTTTTGCTACCTGGGGG
CircID chr16:28322306|28322603
ORF Type ORF2
Protein Length 80
Nucleotide Length 240
Protein Sequence MSGEWRGWGTSQKVLGVHSGRPGPSKSPSNGPEPQEGPWQGTLTGTASPMWCLLRGSRASTERGRGSGGAAVVSVLLPGG
Nucleotide Sequence ATGAGTGGGGAGTGGAGAGGTTGGGGCACCAGCCAGAAAGTGCTCGGAGTTCACTCTGGCCGGCCTGGCCCATCAAAGAGCCCCTCAAATGGCCCAGAACCCCAGGAGGGACCCTGGCAGGGGACCCTGACAGGGACAGCCTCACCCATGTGGTGCTTATTGCGGGGGTCCCGGGCCTCCACAGAGAGGGGCAGGGGGTCAGGCGGGGCTGCTGTTGTCTCTGTTTTGCTACCTGGGGGC
CircID chr16:28322306|28322603
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MPLSVEARDPRNKHHMGEAVPVRVPCQGPSWGSGPFEGLFDGPGRPE
Nucleotide Sequence CTGCCCCTCTCTGTGGAGGCCCGGGACCCCCGCAATAAGCACCACATGGGTGAGGCTGTCCCTGTCAGGGTCCCCTGCCAGGGTCCCTCCTGGGGTTCTGGGCCATTTGAGGGGCTCTTTGATGGGCCAGGCCGGCCAGAGTGA
CircID chr16:28322306|28322603
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MVPQPLHSPLIPTLKKGYRSPALPGSSLQT
Nucleotide Sequence CTGGTGCCCCAACCTCTCCACTCCCCACTCATTCCCACCTTGAAAAAGGGCTATAGGTCCCCTGCCCTGCCCGGGTCCAGTTTACAAACA
CircID chr16:28322306|28322603
ORF Type ORF5
Protein Length 70
Nucleotide Length 213
Protein Sequence MTPCPSLWRPGTPAISTTWVRLSLSGSPARVPPGVLGHLRGSLMGQAGQSELRALSGWCPNLSTPHSFPP
Nucleotide Sequence CTGACCCCCTGCCCCTCTCTGTGGAGGCCCGGGACCCCCGCAATAAGCACCACATGGGTGAGGCTGTCCCTGTCAGGGTCCCCTGCCAGGGTCCCTCCTGGGGTTCTGGGCCATTTGAGGGGCTCTTTGATGGGCCAGGCCGGCCAGAGTGAACTCCGAGCACTTTCTGGCTGGTGCCCCAACCTCTCCACTCCCCACTCATTCCCACCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab