CircRNA Information

General Information
circRNA Basic Information
CircID chr16:2855629|2855900
Strand +
CircType exon
Host Gene ENSG00000005001.8;
Algorism CIRI2;
Sequence CTCCTCCCAGACCAGGCCTGGCTGATCCTCCCCTTCCCTTTCCTTCCAGCAACCTGAACAAACCATACCTGTTCTCTGTGCTGCTGGGGGCCTGGCAGCTGGGGAACCCTGGCTCTCGGTCCCAGAAGGTGGGTGTTGCCTGGGTGGAGCCCCACCCTGTGTATTCCTGGAAGGAAGGTGCCTGTGCAGACATTGCCCTGGTGCGTCTCGAGCGCTCCATACAGTTCTCAGAGCGGGTCCTGCCCATCTGCCTACCTGATGCCTCTATCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:2855629|2855900 hsa-miR-15a-5p 0 0 1
chr16:2855629|2855900 hsa-miR-15a-3p 0 0 1
chr16:2855629|2855900 hsa-miR-22-5p 0 0 1
chr16:2855629|2855900 hsa-miR-22-3p 0 0 1
chr16:2855629|2855900 hsa-miR-15b-5p 0 0 1
chr16:2855629|2855900 hsa-miR-15b-3p 0 0 1
chr16:2855629|2855900 hsa-miR-146a-5p 0 0 1
chr16:2855629|2855900 hsa-miR-146a-3p 0 0 1
chr16:2855629|2855900 hsa-miR-195-5p 0 0 1
chr16:2855629|2855900 hsa-miR-195-3p 0 0 1
chr16:2855629|2855900 hsa-miR-375-5p 0 0 1
chr16:2855629|2855900 hsa-miR-375-3p 0 0 1
chr16:2855629|2855900 hsa-miR-346 0 0 1
chr16:2855629|2855900 hsa-miR-424-5p 0 0 1
chr16:2855629|2855900 hsa-miR-424-3p 0 0 1
chr16:2855629|2855900 hsa-miR-497-5p 0 0 1
chr16:2855629|2855900 hsa-miR-497-3p 0 0 1
chr16:2855629|2855900 hsa-miR-584-5p 0 0 1
chr16:2855629|2855900 hsa-miR-584-3p 0 0 1
chr16:2855629|2855900 hsa-miR-589-5p 0 0 1
chr16:2855629|2855900 hsa-miR-589-3p 0 0 1
chr16:2855629|2855900 hsa-miR-632 0 0 1
chr16:2855629|2855900 hsa-miR-765 0 0 1
chr16:2855629|2855900 hsa-miR-665 0 0 1
chr16:2855629|2855900 hsa-miR-940 0 0 1
chr16:2855629|2855900 hsa-miR-1237-5p 0 0 1
chr16:2855629|2855900 hsa-miR-1237-3p 0 0 1
chr16:2855629|2855900 hsa-miR-1286 0 0 1
chr16:2855629|2855900 hsa-miR-1287-5p 0 0 1
chr16:2855629|2855900 hsa-miR-1287-3p 0 0 1
chr16:2855629|2855900 hsa-miR-1252-5p 0 0 1
chr16:2855629|2855900 hsa-miR-1252-3p 0 0 1
chr16:2855629|2855900 hsa-miR-139-3p 0 0 1
chr16:2855629|2855900 hsa-miR-361-3p 0 0 1
chr16:2855629|2855900 hsa-miR-1224-3p 0 0 1
chr16:2855629|2855900 hsa-miR-654-3p 0 1 1
chr16:2855629|2855900 hsa-miR-146b-5p 0 0 1
chr16:2855629|2855900 hsa-miR-16 0 0 1
chr16:2855629|2855900 hsa-miR-220c 0 0 1
chr16:2855629|2855900 hsa-miR-612 1 1 0
chr16:2855629|2855900 hsa-miR-638 1 0 0
chr16:2855629|2855900 hsa-miR-650 1 0 0
chr16:2855629|2855900 hsa-miR-663a 1 0 0
chr16:2855629|2855900 hsa-miR-3132 1 0 0
chr16:2855629|2855900 hsa-miR-3154 1 0 0
chr16:2855629|2855900 hsa-miR-3652 1 0 0
chr16:2855629|2855900 hsa-miR-3921 0 1 0
chr16:2855629|2855900 hsa-miR-4476 1 0 0
chr16:2855629|2855900 hsa-miR-4523 0 1 0
chr16:2855629|2855900 hsa-miR-4530 0 1 0
chr16:2855629|2855900 hsa-miR-4533 1 0 0
chr16:2855629|2855900 hsa-miR-3976 0 1 0
chr16:2855629|2855900 hsa-miR-4673 0 1 0
chr16:2855629|2855900 hsa-miR-4688 1 0 0
chr16:2855629|2855900 hsa-miR-4739 1 1 0
chr16:2855629|2855900 hsa-miR-5087 0 1 0
chr16:2855629|2855900 hsa-miR-6090 1 0 0
chr16:2855629|2855900 hsa-miR-6124 1 0 0
chr16:2855629|2855900 hsa-miR-6860 1 0 0
chr16:2855629|2855900 hsa-miR-4433b-3p 1 0 0
chr16:2855629|2855900 hsa-miR-500b-3p 0 1 0
chr16:2855629|2855900 hsa-miR-3157-5p 0 1 0
chr16:2855629|2855900 hsa-miR-7106-5p 0 1 0
chr16:2855629|2855900 hsa-miR-6825-5p 0 1 0
chr16:2855629|2855900 hsa-miR-6894-5p 0 1 0
chr16:2855629|2855900 hsa-miR-4687-3p 1 0 0
chr16:2855629|2855900 hsa-miR-3622a-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6757-5p 1 0 0
chr16:2855629|2855900 hsa-miR-4695-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6730-5p 1 0 0
chr16:2855629|2855900 hsa-miR-4755-3p 1 1 0
chr16:2855629|2855900 hsa-miR-593-5p 1 1 0
chr16:2855629|2855900 hsa-miR-6727-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6806-5p 1 1 0
chr16:2855629|2855900 hsa-miR-6721-5p 1 0 0
chr16:2855629|2855900 hsa-miR-23b-5p 0 1 0
chr16:2855629|2855900 hsa-miR-197-5p 1 0 0
chr16:2855629|2855900 hsa-miR-33a-3p 0 1 0
chr16:2855629|2855900 hsa-miR-3663-5p 0 1 0
chr16:2855629|2855900 hsa-miR-4711-5p 0 1 0
chr16:2855629|2855900 hsa-miR-2467-3p 1 0 0
chr16:2855629|2855900 hsa-miR-5008-5p 0 1 0
chr16:2855629|2855900 hsa-miR-1229-5p 1 1 0
chr16:2855629|2855900 hsa-miR-6753-5p 0 1 0
chr16:2855629|2855900 hsa-miR-3667-3p 0 1 0
chr16:2855629|2855900 hsa-miR-767-5p 1 0 0
chr16:2855629|2855900 hsa-miR-877-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6749-5p 0 1 0
chr16:2855629|2855900 hsa-miR-6824-5p 1 1 0
chr16:2855629|2855900 hsa-miR-6789-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6880-3p 1 0 0
chr16:2855629|2855900 hsa-miR-16-5p 0 1 0
chr16:2855629|2855900 hsa-let-7g-3p 0 1 0
chr16:2855629|2855900 hsa-miR-1207-5p 1 0 0
chr16:2855629|2855900 hsa-miR-4763-3p 1 0 0
chr16:2855629|2855900 hsa-miR-6775-5p 1 0 0
chr16:2855629|2855900 hsa-miR-5001-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6743-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6754-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6756-5p 1 1 0
chr16:2855629|2855900 hsa-miR-1249-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6779-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6797-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6808-5p 1 1 0
chr16:2855629|2855900 hsa-miR-6879-5p 1 0 0
chr16:2855629|2855900 hsa-miR-7111-5p 1 1 0
chr16:2855629|2855900 hsa-miR-4728-5p 1 1 0
chr16:2855629|2855900 hsa-miR-5196-5p 1 1 0
chr16:2855629|2855900 hsa-miR-6836-5p 1 0 0
chr16:2855629|2855900 hsa-miR-10396b-5p 1 0 0
chr16:2855629|2855900 hsa-miR-1909-3p 1 0 0
chr16:2855629|2855900 hsa-miR-4745-5p 1 0 0
chr16:2855629|2855900 hsa-miR-6735-5p 1 1 0
chr16:2855629|2855900 hsa-miR-6831-5p 1 0 0
chr16:2855629|2855900 hsa-miR-939-5p 1 0 0
chr16:2855629|2855900 hsa-miR-1910-3p 0 1 0
chr16:2855629|2855900 hsa-miR-6511a-5p 0 1 0
chr16:2855629|2855900 hsa-miR-1914-3p 1 0 0
chr16:2855629|2855900 hsa-miR-4747-5p 1 1 0
chr16:2855629|2855900 hsa-miR-1185-1-3p 0 1 0
chr16:2855629|2855900 hsa-miR-1185-2-3p 0 1 0
chr16:2855629|2855900 hsa-miR-6724-5p 1 0 0
chr16:2855629|2855900 hsa-miR-502-3p 0 1 0
chr16:2855629|2855900 hsa-miR-501-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:2855629|2855900
ORF Type ORF1
Protein Length 65
Nucleotide Length 195
Protein Sequence MCCWGPGSWGTLALGPRRWVLPGWSPTLCIPGRKVPVQTLPWCVSSAPYSSQSGSCPSAYLMPLS
Nucleotide Sequence CTGTGCTGCTGGGGGCCTGGCAGCTGGGGAACCCTGGCTCTCGGTCCCAGAAGGTGGGTGTTGCCTGGGTGGAGCCCCACCCTGTGTATTCCTGGAAGGAAGGTGCCTGTGCAGACATTGCCCTGGTGCGTCTCGAGCGCTCCATACAGTTCTCAGAGCGGGTCCTGCCCATCTGCCTACCTGATGCCTCTATCC
CircID chr16:2855629|2855900
ORF Type ORF2
Protein Length 55
Nucleotide Length 168
Protein Sequence MAAGEPWLSVPEGGCCLGGAPPCVFLEGRCLCRHCPGASRALHTVLRAGPAHLPT
Nucleotide Sequence CTGGCAGCTGGGGAACCCTGGCTCTCGGTCCCAGAAGGTGGGTGTTGCCTGGGTGGAGCCCCACCCTGTGTATTCCTGGAAGGAAGGTGCCTGTGCAGACATTGCCCTGGTGCGTCTCGAGCGCTCCATACAGTTCTCAGAGCGGGTCCTGCCCATCTGCCTACCTGA
CircID chr16:2855629|2855900
ORF Type ORF3
Protein Length 85
Nucleotide Length 255
Protein Sequence MADPPLPFPSSNLNKPYLFSVLLGAWQLGNPGSRSQKVGVAWVEPHPVYSWKEGACADIALVRLERSIQFSERVLPICLPDASIH
Nucleotide Sequence CTGGCTGATCCTCCCCTTCCCTTTCCTTCCAGCAACCTGAACAAACCATACCTGTTCTCTGTGCTGCTGGGGGCCTGGCAGCTGGGGAACCCTGGCTCTCGGTCCCAGAAGGTGGGTGTTGCCTGGGTGGAGCCCCACCCTGTGTATTCCTGGAAGGAAGGTGCCTGTGCAGACATTGCCCTGGTGCGTCTCGAGCGCTCCATACAGTTCTCAGAGCGGGTCCTGCCCATCTGCCTACCTGATGCCTCTATCCAC
CircID chr16:2855629|2855900
ORF Type ORF4
Protein Length 74
Nucleotide Length 222
Protein Sequence MYGALETHQGNVCTGTFLPGIHRVGLHPGNTHLLGPRARVPQLPGPQQHREQVWFVQVAGRKGKGRISQAWSGR
Nucleotide Sequence CTGTATGGAGCGCTCGAGACGCACCAGGGCAATGTCTGCACAGGCACCTTCCTTCCAGGAATACACAGGGTGGGGCTCCACCCAGGCAACACCCACCTTCTGGGACCGAGAGCCAGGGTTCCCCAGCTGCCAGGCCCCCAGCAGCACAGAGAACAGGTATGGTTTGTTCAGGTTGCTGGAAGGAAAGGGAAGGGGAGGATCAGCCAGGCCTGGTCTGGGAGG
CircID chr16:2855629|2855900
ORF Type ORF5
Protein Length 82
Nucleotide Length 246
Protein Sequence MGRTRSENCMERSRRTRAMSAQAPSFQEYTGWGSTQATPTFWDREPGFPSCQAPSSTENRYGLFRLLEGKGRGGSARPGLGG
Nucleotide Sequence ATGGGCAGGACCCGCTCTGAGAACTGTATGGAGCGCTCGAGACGCACCAGGGCAATGTCTGCACAGGCACCTTCCTTCCAGGAATACACAGGGTGGGGCTCCACCCAGGCAACACCCACCTTCTGGGACCGAGAGCCAGGGTTCCCCAGCTGCCAGGCCCCCAGCAGCACAGAGAACAGGTATGGTTTGTTCAGGTTGCTGGAAGGAAAGGGAAGGGGAGGATCAGCCAGGCCTGGTCTGGGAGGA
CircID chr16:2855629|2855900
ORF Type ORF6
Protein Length 77
Nucleotide Length 231
Protein Sequence MRTVWSARDAPGQCLHRHLPSRNTQGGAPPRQHPPSGTESQGSPAARPPAAQRTGMVCSGCWKEREGEDQPGLVWEE
Nucleotide Sequence CTGAGAACTGTATGGAGCGCTCGAGACGCACCAGGGCAATGTCTGCACAGGCACCTTCCTTCCAGGAATACACAGGGTGGGGCTCCACCCAGGCAACACCCACCTTCTGGGACCGAGAGCCAGGGTTCCCCAGCTGCCAGGCCCCCAGCAGCACAGAGAACAGGTATGGTTTGTTCAGGTTGCTGGAAGGAAAGGGAAGGGGAGGATCAGCCAGGCCTGGTCTGGGAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab