CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28843856|28844081
Strand -
CircType exon
Host Gene ENSG00000178952.7;
Algorism CIRI2;
Sequence CTGGAGGAGAGCAAGCAATGACGGTGAGCTGGGCTTGGCTGGAGGCTGGGGAGAGCTTGGCTCAACCCTGCCCACCGTCACCTGGAGCCCTCACCTGGGCCTCCACCTTCTGGTGGGGCTTGATGGAACCTGGCTTGACCATGACCAGGCCCCGCCGCAAGTCCTCCCGCTTCAAGCCTCGGACCAGGGCCCCGAGGTTATCTCCGGCCTCGGCCCTCTCCAGGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28843856|28844081 hsa-miR-185-5p 0 0 1
chr16:28843856|28844081 hsa-miR-185-3p 0 0 1
chr16:28843856|28844081 hsa-miR-616-5p 0 0 1
chr16:28843856|28844081 hsa-miR-616-3p 0 0 1
chr16:28843856|28844081 hsa-miR-650 0 0 1
chr16:28843856|28844081 hsa-miR-766-5p 0 0 1
chr16:28843856|28844081 hsa-miR-766-3p 0 0 1
chr16:28843856|28844081 hsa-miR-541-5p 0 0 1
chr16:28843856|28844081 hsa-miR-541-3p 0 0 1
chr16:28843856|28844081 hsa-miR-744-5p 0 0 1
chr16:28843856|28844081 hsa-miR-744-3p 0 0 1
chr16:28843856|28844081 hsa-miR-1291 0 0 1
chr16:28843856|28844081 hsa-miR-127-5p 0 0 1
chr16:28843856|28844081 hsa-miR-125a-3p 0 1 1
chr16:28843856|28844081 hsa-miR-296-3p 0 1 1
chr16:28843856|28844081 hsa-miR-654-5p 0 0 1
chr16:28843856|28844081 hsa-miR-1207-5p 0 0 1
chr16:28843856|28844081 hsa-miR-1254 0 0 1
chr16:28843856|28844081 hsa-miR-663 0 0 1
chr16:28843856|28844081 hsa-miR-612 0 1 0
chr16:28843856|28844081 hsa-miR-663a 1 0 0
chr16:28843856|28844081 hsa-miR-665 0 1 0
chr16:28843856|28844081 hsa-miR-2861 0 1 0
chr16:28843856|28844081 hsa-miR-3131 1 1 0
chr16:28843856|28844081 hsa-miR-3188 0 1 0
chr16:28843856|28844081 hsa-miR-1268b 1 0 0
chr16:28843856|28844081 hsa-miR-4443 0 1 0
chr16:28843856|28844081 hsa-miR-4466 1 0 0
chr16:28843856|28844081 hsa-miR-4537 1 1 0
chr16:28843856|28844081 hsa-miR-4651 1 0 0
chr16:28843856|28844081 hsa-miR-4656 1 0 0
chr16:28843856|28844081 hsa-miR-4706 1 0 0
chr16:28843856|28844081 hsa-miR-4710 0 1 0
chr16:28843856|28844081 hsa-miR-4721 1 1 0
chr16:28843856|28844081 hsa-miR-4739 1 1 0
chr16:28843856|28844081 hsa-miR-4748 1 1 0
chr16:28843856|28844081 hsa-miR-8072 1 1 0
chr16:28843856|28844081 hsa-miR-8083 0 1 0
chr16:28843856|28844081 hsa-miR-12114 0 1 0
chr16:28843856|28844081 hsa-miR-4726-3p 0 1 0
chr16:28843856|28844081 hsa-miR-6765-5p 1 0 0
chr16:28843856|28844081 hsa-miR-6894-5p 1 0 0
chr16:28843856|28844081 hsa-miR-218-1-3p 0 1 0
chr16:28843856|28844081 hsa-miR-6799-5p 1 0 0
chr16:28843856|28844081 hsa-miR-6089 1 1 0
chr16:28843856|28844081 hsa-miR-6880-5p 1 1 0
chr16:28843856|28844081 hsa-miR-7847-3p 0 1 0
chr16:28843856|28844081 hsa-miR-6746-5p 1 0 0
chr16:28843856|28844081 hsa-miR-4722-5p 1 0 0
chr16:28843856|28844081 hsa-miR-7154-3p 0 1 0
chr16:28843856|28844081 hsa-miR-874-3p 0 1 0
chr16:28843856|28844081 hsa-miR-6849-3p 0 1 0
chr16:28843856|28844081 hsa-miR-6845-3p 0 1 0
chr16:28843856|28844081 hsa-miR-6796-3p 1 1 0
chr16:28843856|28844081 hsa-miR-6798-5p 1 0 0
chr16:28843856|28844081 hsa-miR-615-3p 0 1 0
chr16:28843856|28844081 hsa-miR-6786-5p 0 1 0
chr16:28843856|28844081 hsa-miR-5088-5p 0 1 0
chr16:28843856|28844081 hsa-miR-1226-5p 0 1 0
chr16:28843856|28844081 hsa-miR-6763-3p 1 1 0
chr16:28843856|28844081 hsa-miR-1229-5p 0 1 0
chr16:28843856|28844081 hsa-miR-6784-5p 1 1 0
chr16:28843856|28844081 hsa-miR-6771-5p 1 0 0
chr16:28843856|28844081 hsa-miR-6823-5p 0 1 0
chr16:28843856|28844081 hsa-miR-6749-5p 1 0 0
chr16:28843856|28844081 hsa-miR-149-3p 1 0 0
chr16:28843856|28844081 hsa-miR-6877-5p 0 1 0
chr16:28843856|28844081 hsa-miR-7152-3p 0 1 0
chr16:28843856|28844081 hsa-miR-10400-5p 1 0 0
chr16:28843856|28844081 hsa-miR-1233-5p 1 0 0
chr16:28843856|28844081 hsa-miR-4763-3p 0 1 0
chr16:28843856|28844081 hsa-miR-6769b-5p 0 1 0
chr16:28843856|28844081 hsa-miR-6778-5p 1 1 0
chr16:28843856|28844081 hsa-miR-6787-5p 0 1 0
chr16:28843856|28844081 hsa-miR-6816-5p 1 0 0
chr16:28843856|28844081 hsa-miR-6775-5p 1 0 0
chr16:28843856|28844081 hsa-miR-6756-5p 1 0 0
chr16:28843856|28844081 hsa-miR-6769a-5p 0 1 0
chr16:28843856|28844081 hsa-miR-6779-5p 1 0 0
chr16:28843856|28844081 hsa-miR-7111-5p 1 0 0
chr16:28843856|28844081 hsa-miR-10396a-5p 1 0 0
chr16:28843856|28844081 hsa-miR-10396b-5p 1 1 0
chr16:28843856|28844081 hsa-miR-4685-5p 1 0 0
chr16:28843856|28844081 hsa-miR-6848-5p 1 0 0
chr16:28843856|28844081 hsa-miR-3940-5p 0 1 0
chr16:28843856|28844081 hsa-miR-3150b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:28843856|28844081
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MGRAWLNPAHRHLEPSPGPPPSGGA
Nucleotide Sequence CTGGGGAGAGCTTGGCTCAACCCTGCCCACCGTCACCTGGAGCCCTCACCTGGGCCTCCACCTTCTGGTGGGGCTTGA
CircID chr16:28843856|28844081
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence MGLAGGWGELGSTLPTVTWSPHLGLHLLVGLDGTWLDHDQAPPQVLPLQASDQGPEVISGLGPLQA
Nucleotide Sequence CTGGGCTTGGCTGGAGGCTGGGGAGAGCTTGGCTCAACCCTGCCCACCGTCACCTGGAGCCCTCACCTGGGCCTCCACCTTCTGGTGGGGCTTGATGGAACCTGGCTTGACCATGACCAGGCCCCGCCGCAAGTCCTCCCGCTTCAAGCCTCGGACCAGGGCCCCGAGGTTATCTCCGGCCTCGGCCCTCTCCAGGCT
CircID chr16:28843856|28844081
ORF Type ORF3
Protein Length 69
Nucleotide Length 207
Protein Sequence MTVSWAWLEAGESLAQPCPPSPGALTWASTFWWGLMEPGLTMTRPRRKSSRFKPRTRAPRLSPASALSR
Nucleotide Sequence ATGACGGTGAGCTGGGCTTGGCTGGAGGCTGGGGAGAGCTTGGCTCAACCCTGCCCACCGTCACCTGGAGCCCTCACCTGGGCCTCCACCTTCTGGTGGGGCTTGATGGAACCTGGCTTGACCATGACCAGGCCCCGCCGCAAGTCCTCCCGCTTCAAGCCTCGGACCAGGGCCCCGAGGTTATCTCCGGCCTCGGCCCTCTCCAGG
CircID chr16:28843856|28844081
ORF Type ORF4
Protein Length 53
Nucleotide Length 162
Protein Sequence MERAEAGDNLGALVRGLKREDLRRGLVMVKPGSIKPHQKVEAQVRAPGDGGQG
Nucleotide Sequence CTGGAGAGGGCCGAGGCCGGAGATAACCTCGGGGCCCTGGTCCGAGGCTTGAAGCGGGAGGACTTGCGGCGGGGCCTGGTCATGGTCAAGCCAGGTTCCATCAAGCCCCACCAGAAGGTGGAGGCCCAGGTGAGGGCTCCAGGTGACGGTGGGCAGGGTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab