CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28843985|28844280
Strand -
CircType exon
Host Gene ENSG00000178952.7;
Algorism CIRI2;
Sequence CTGGCTTGACCATGACCAGGCCCCGCCGCAAGTCCTCCCGCTTCAAGCCTCGGACCAGGGCCCCGAGGTTATCTCCGGCCTCGGCCCTCTCCAGGCTCTTGTGGAACATCTCAATGCCTAGGACGGAAAGGGAAAAGGAGCAGGGAGAAGGAAGGCGAATGTGAGACAGAGGGAAGGCACAAGGGATCTGCCGGGGTAAGGCCACCCTTCAGCCAGGCCCTGCTCTCCAGACTGGCTTCCCAAACCTGTCACCACAGTGCGGATGTTCTTGCTATGTCCTAGGAGCTCACACTCGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28843985|28844280 hsa-miR-23a-5p 0 0 1
chr16:28843985|28844280 hsa-miR-23a-3p 0 0 1
chr16:28843985|28844280 hsa-miR-204-5p 0 0 1
chr16:28843985|28844280 hsa-miR-204-3p 0 0 1
chr16:28843985|28844280 hsa-miR-211-5p 0 0 1
chr16:28843985|28844280 hsa-miR-211-3p 0 0 1
chr16:28843985|28844280 hsa-miR-23b-5p 0 0 1
chr16:28843985|28844280 hsa-miR-23b-3p 0 0 1
chr16:28843985|28844280 hsa-miR-143-5p 0 0 1
chr16:28843985|28844280 hsa-miR-143-3p 0 0 1
chr16:28843985|28844280 hsa-miR-185-5p 0 0 1
chr16:28843985|28844280 hsa-miR-185-3p 0 0 1
chr16:28843985|28844280 hsa-miR-335-5p 0 0 1
chr16:28843985|28844280 hsa-miR-335-3p 0 0 1
chr16:28843985|28844280 hsa-miR-575 0 1 1
chr16:28843985|28844280 hsa-miR-622 0 1 1
chr16:28843985|28844280 hsa-miR-623 0 0 1
chr16:28843985|28844280 hsa-miR-744-5p 0 0 1
chr16:28843985|28844280 hsa-miR-744-3p 0 0 1
chr16:28843985|28844280 hsa-miR-1237-5p 0 0 1
chr16:28843985|28844280 hsa-miR-1237-3p 0 0 1
chr16:28843985|28844280 hsa-miR-1291 0 0 1
chr16:28843985|28844280 hsa-miR-1248 0 0 1
chr16:28843985|28844280 hsa-miR-1256 0 1 1
chr16:28843985|28844280 hsa-miR-1197 0 0 1
chr16:28843985|28844280 hsa-miR-127-5p 0 0 1
chr16:28843985|28844280 hsa-miR-671-5p 1 1 1
chr16:28843985|28844280 hsa-miR-574-5p 0 0 1
chr16:28843985|28844280 hsa-miR-188-5p 0 0 1
chr16:28843985|28844280 hsa-miR-342-3p 0 0 1
chr16:28843985|28844280 hsa-miR-542-3p 0 0 1
chr16:28843985|28844280 hsa-miR-550 0 0 1
chr16:28843985|28844280 hsa-miR-642 0 0 1
chr16:28843985|28844280 hsa-miR-516b 0 0 1
chr16:28843985|28844280 hsa-miR-1254 0 0 1
chr16:28843985|28844280 hsa-miR-663 0 0 1
chr16:28843985|28844280 hsa-miR-2113 1 1 0
chr16:28843985|28844280 hsa-miR-1182 0 1 0
chr16:28843985|28844280 hsa-miR-2278 0 1 0
chr16:28843985|28844280 hsa-miR-2861 1 1 0
chr16:28843985|28844280 hsa-miR-3131 1 1 0
chr16:28843985|28844280 hsa-miR-3188 0 1 0
chr16:28843985|28844280 hsa-miR-4297 0 1 0
chr16:28843985|28844280 hsa-miR-4318 0 1 0
chr16:28843985|28844280 hsa-miR-4322 1 0 0
chr16:28843985|28844280 hsa-miR-3918 0 1 0
chr16:28843985|28844280 hsa-miR-4449 1 0 0
chr16:28843985|28844280 hsa-miR-4466 1 0 0
chr16:28843985|28844280 hsa-miR-4512 0 1 0
chr16:28843985|28844280 hsa-miR-3960 1 0 0
chr16:28843985|28844280 hsa-miR-4656 1 1 0
chr16:28843985|28844280 hsa-miR-4658 1 0 0
chr16:28843985|28844280 hsa-miR-4682 1 0 0
chr16:28843985|28844280 hsa-miR-4706 1 0 0
chr16:28843985|28844280 hsa-miR-4721 1 0 0
chr16:28843985|28844280 hsa-miR-4739 1 1 0
chr16:28843985|28844280 hsa-miR-4748 1 1 0
chr16:28843985|28844280 hsa-miR-4780 1 0 0
chr16:28843985|28844280 hsa-miR-6081 0 1 0
chr16:28843985|28844280 hsa-miR-6860 1 0 0
chr16:28843985|28844280 hsa-miR-8072 1 1 0
chr16:28843985|28844280 hsa-miR-8083 0 1 0
chr16:28843985|28844280 hsa-miR-8089 1 0 0
chr16:28843985|28844280 hsa-miR-504-3p 1 0 0
chr16:28843985|28844280 hsa-miR-6765-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6894-5p 1 0 0
chr16:28843985|28844280 hsa-miR-3692-3p 0 1 0
chr16:28843985|28844280 hsa-miR-6089 1 1 0
chr16:28843985|28844280 hsa-miR-6746-5p 1 0 0
chr16:28843985|28844280 hsa-miR-3064-5p 0 1 0
chr16:28843985|28844280 hsa-miR-7154-3p 0 1 0
chr16:28843985|28844280 hsa-miR-6875-3p 1 0 0
chr16:28843985|28844280 hsa-miR-6806-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6721-5p 0 1 0
chr16:28843985|28844280 hsa-miR-874-3p 0 1 0
chr16:28843985|28844280 hsa-miR-6873-3p 1 1 0
chr16:28843985|28844280 hsa-miR-6798-5p 1 0 0
chr16:28843985|28844280 hsa-miR-4793-3p 1 0 0
chr16:28843985|28844280 hsa-miR-6786-5p 1 0 0
chr16:28843985|28844280 hsa-miR-1226-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6740-5p 1 1 0
chr16:28843985|28844280 hsa-miR-4793-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6763-3p 1 0 0
chr16:28843985|28844280 hsa-miR-4786-3p 0 1 0
chr16:28843985|28844280 hsa-miR-6784-5p 0 1 0
chr16:28843985|28844280 hsa-miR-1908-5p 1 0 0
chr16:28843985|28844280 hsa-miR-7113-3p 1 1 0
chr16:28843985|28844280 hsa-miR-3667-3p 0 1 0
chr16:28843985|28844280 hsa-miR-6771-5p 1 1 0
chr16:28843985|28844280 hsa-miR-6749-5p 1 0 0
chr16:28843985|28844280 hsa-miR-4446-5p 1 0 0
chr16:28843985|28844280 hsa-miR-149-3p 1 0 0
chr16:28843985|28844280 hsa-miR-6877-5p 0 1 0
chr16:28843985|28844280 hsa-miR-4646-3p 1 0 0
chr16:28843985|28844280 hsa-miR-7152-3p 0 1 0
chr16:28843985|28844280 hsa-miR-4776-3p 1 0 0
chr16:28843985|28844280 hsa-miR-7106-3p 1 0 0
chr16:28843985|28844280 hsa-miR-6867-3p 0 1 0
chr16:28843985|28844280 hsa-miR-106b-3p 0 1 0
chr16:28843985|28844280 hsa-miR-2276-5p 0 1 0
chr16:28843985|28844280 hsa-miR-6782-3p 1 0 0
chr16:28843985|28844280 hsa-miR-6738-3p 1 0 0
chr16:28843985|28844280 hsa-miR-6880-3p 1 1 0
chr16:28843985|28844280 hsa-miR-6734-3p 1 1 0
chr16:28843985|28844280 hsa-miR-6780b-3p 1 1 0
chr16:28843985|28844280 hsa-miR-642a-5p 0 1 0
chr16:28843985|28844280 hsa-miR-6888-3p 0 1 0
chr16:28843985|28844280 hsa-miR-10400-5p 1 0 0
chr16:28843985|28844280 hsa-miR-1233-5p 1 0 0
chr16:28843985|28844280 hsa-miR-4763-3p 1 1 0
chr16:28843985|28844280 hsa-miR-6778-5p 1 1 0
chr16:28843985|28844280 hsa-miR-6816-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6775-5p 1 0 0
chr16:28843985|28844280 hsa-miR-1343-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6737-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6756-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6763-5p 0 1 0
chr16:28843985|28844280 hsa-miR-6779-5p 1 0 0
chr16:28843985|28844280 hsa-miR-320a-5p 1 1 0
chr16:28843985|28844280 hsa-miR-4755-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6866-3p 0 1 0
chr16:28843985|28844280 hsa-miR-6836-5p 1 1 0
chr16:28843985|28844280 hsa-miR-10396a-5p 1 0 0
chr16:28843985|28844280 hsa-miR-10396b-5p 1 1 0
chr16:28843985|28844280 hsa-miR-4685-5p 1 1 0
chr16:28843985|28844280 hsa-miR-6848-5p 1 0 0
chr16:28843985|28844280 hsa-miR-3187-5p 1 0 0
chr16:28843985|28844280 hsa-miR-939-5p 1 1 0
chr16:28843985|28844280 hsa-miR-4758-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6731-5p 1 1 0
chr16:28843985|28844280 hsa-miR-3679-5p 1 0 0
chr16:28843985|28844280 hsa-miR-6756-3p 1 0 0
chr16:28843985|28844280 hsa-miR-6810-3p 1 1 0
chr16:28843985|28844280 hsa-miR-10400-3p 1 0 0
chr16:28843985|28844280 hsa-miR-4723-3p 1 0 0
chr16:28843985|28844280 hsa-miR-3150b-5p 0 1 0
chr16:28843985|28844280 hsa-miR-4768-5p 0 1 0
chr16:28843985|28844280 hsa-miR-4676-5p 0 1 0
chr16:28843985|28844280 hsa-miR-5006-3p 1 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr16:28843985|28844280
ORF Type ORF1
Protein Length 52
Nucleotide Length 159
Protein Sequence MTMTRPRRKSSRFKPRTRAPRLSPASALSRLLWNISMPRTEREKEQGEGRRM
Nucleotide Sequence TTGACCATGACCAGGCCCCGCCGCAAGTCCTCCCGCTTCAAGCCTCGGACCAGGGCCCCGAGGTTATCTCCGGCCTCGGCCCTCTCCAGGCTCTTGTGGAACATCTCAATGCCTAGGACGGAAAGGGAAAAGGAGCAGGGAGAAGGAAGGCGAATGTGA

CircID chr16:28843985|28844280
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MESRAWLKGGLTPADPLCLPSVSHSPSFSLLLFPFRPRH
Nucleotide Sequence CTGGAGAGCAGGGCCTGGCTGAAGGGTGGCCTTACCCCGGCAGATCCCTTGTGCCTTCCCTCTGTCTCACATTCGCCTTCCTTCTCCCTGCTCCTTTTCCCTTTCCGTCCTAGGCATTGA

CircID chr16:28843985|28844280
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MSHIRLPSPCSFSLSVLGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVMVKP
Nucleotide Sequence CTGTCTCACATTCGCCTTCCTTCTCCCTGCTCCTTTTCCCTTTCCGTCCTAGGCATTGAGATGTTCCACAAGAGCCTGGAGAGGGCCGAGGCCGGAGATAACCTCGGGGCCCTGGTCCGAGGCTTGAAGCGGGAGGACTTGCGGCGGGGCCTGGTCATGGTCAAGCCA

CircID chr16:28843985|28844280
ORF Type ORF4
Protein Length 41
Nucleotide Length 126
Protein Sequence MGSQSGEQGLAEGWPYPGRSLVPSLCLTFAFLLPAPFPFPS
Nucleotide Sequence TTGGGAAGCCAGTCTGGAGAGCAGGGCCTGGCTGAAGGGTGGCCTTACCCCGGCAGATCCCTTGTGCCTTCCCTCTGTCTCACATTCGCCTTCCTTCTCCCTGCTCCTTTTCCCTTTCCGTCCTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites