CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28844004|28844307
Strand +
CircType exon
Host Gene ENSG00000178952.7;
Algorism CIRI2;
Sequence TAGAGCGTGGCATTTTAAAGAAGGGAGACGAGTGTGAGCTCCTAGGACATAGCAAGAACATCCGCACTGTGGTGACAGGTTTGGGAAGCCAGTCTGGAGAGCAGGGCCTGGCTGAAGGGTGGCCTTACCCCGGCAGATCCCTTGTGCCTTCCCTCTGTCTCACATTCGCCTTCCTTCTCCCTGCTCCTTTTCCCTTTCCGTCCTAGGCATTGAGATGTTCCACAAGAGCCTGGAGAGGGCCGAGGCCGGAGATAACCTCGGGGCCCTGGTCCGAGGCTTGAAGCGGGAGGACTTGCGGCGGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28844004|28844307 hsa-miR-197-5p 0 0 1
chr16:28844004|28844307 hsa-miR-197-3p 0 0 1
chr16:28844004|28844307 hsa-miR-154-5p 0 0 1
chr16:28844004|28844307 hsa-miR-154-3p 0 0 1
chr16:28844004|28844307 hsa-miR-184 1 1 1
chr16:28844004|28844307 hsa-miR-484 0 0 1
chr16:28844004|28844307 hsa-miR-498-5p 0 0 1
chr16:28844004|28844307 hsa-miR-498-3p 0 0 1
chr16:28844004|28844307 hsa-miR-506-5p 0 0 1
chr16:28844004|28844307 hsa-miR-506-3p 0 0 1
chr16:28844004|28844307 hsa-miR-555 0 0 1
chr16:28844004|28844307 hsa-miR-581 0 0 1
chr16:28844004|28844307 hsa-miR-649 0 0 1
chr16:28844004|28844307 hsa-miR-766-5p 0 0 1
chr16:28844004|28844307 hsa-miR-766-3p 0 0 1
chr16:28844004|28844307 hsa-miR-892b 0 0 1
chr16:28844004|28844307 hsa-miR-708-5p 0 0 1
chr16:28844004|28844307 hsa-miR-708-3p 0 0 1
chr16:28844004|28844307 hsa-miR-1291 0 1 1
chr16:28844004|28844307 hsa-miR-1248 0 1 1
chr16:28844004|28844307 hsa-miR-1252-5p 0 0 1
chr16:28844004|28844307 hsa-miR-1252-3p 0 0 1
chr16:28844004|28844307 hsa-miR-296-5p 0 0 1
chr16:28844004|28844307 hsa-miR-28-5p 1 1 1
chr16:28844004|28844307 hsa-miR-140-3p 0 1 1
chr16:28844004|28844307 hsa-miR-342-3p 0 0 1
chr16:28844004|28844307 hsa-miR-220b 0 0 1
chr16:28844004|28844307 hsa-miR-128 0 0 1
chr16:28844004|28844307 hsa-miR-124 0 0 1
chr16:28844004|28844307 hsa-miR-638 1 0 0
chr16:28844004|28844307 hsa-miR-1321 1 1 0
chr16:28844004|28844307 hsa-miR-3135a 0 1 0
chr16:28844004|28844307 hsa-miR-3139 0 1 0
chr16:28844004|28844307 hsa-miR-3141 1 0 0
chr16:28844004|28844307 hsa-miR-3153 1 1 0
chr16:28844004|28844307 hsa-miR-3154 1 0 0
chr16:28844004|28844307 hsa-miR-3155a 0 1 0
chr16:28844004|28844307 hsa-miR-3197 1 0 0
chr16:28844004|28844307 hsa-miR-4298 1 1 0
chr16:28844004|28844307 hsa-miR-4270 1 1 0
chr16:28844004|28844307 hsa-miR-4421 1 0 0
chr16:28844004|28844307 hsa-miR-4441 0 1 0
chr16:28844004|28844307 hsa-miR-4457 0 1 0
chr16:28844004|28844307 hsa-miR-4462 1 0 0
chr16:28844004|28844307 hsa-miR-4476 0 1 0
chr16:28844004|28844307 hsa-miR-4494 0 1 0
chr16:28844004|28844307 hsa-miR-4516 0 1 0
chr16:28844004|28844307 hsa-miR-4706 1 1 0
chr16:28844004|28844307 hsa-miR-4739 1 1 0
chr16:28844004|28844307 hsa-miR-5739 1 0 0
chr16:28844004|28844307 hsa-miR-6081 0 1 0
chr16:28844004|28844307 hsa-miR-6124 1 1 0
chr16:28844004|28844307 hsa-miR-6125 1 0 0
chr16:28844004|28844307 hsa-miR-7150 1 0 0
chr16:28844004|28844307 hsa-miR-8085 1 0 0
chr16:28844004|28844307 hsa-miR-12115 1 0 0
chr16:28844004|28844307 hsa-miR-103a-2-5p 1 1 0
chr16:28844004|28844307 hsa-miR-105-3p 1 1 0
chr16:28844004|28844307 hsa-miR-6749-3p 1 1 0
chr16:28844004|28844307 hsa-miR-139-5p 1 0 0
chr16:28844004|28844307 hsa-miR-3157-5p 0 1 0
chr16:28844004|28844307 hsa-miR-6892-3p 0 1 0
chr16:28844004|28844307 hsa-miR-6510-5p 1 1 0
chr16:28844004|28844307 hsa-miR-6833-5p 1 0 0
chr16:28844004|28844307 hsa-miR-3622a-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6873-5p 0 1 0
chr16:28844004|28844307 hsa-miR-6746-5p 1 0 0
chr16:28844004|28844307 hsa-miR-4722-5p 1 0 0
chr16:28844004|28844307 hsa-miR-4755-3p 1 1 0
chr16:28844004|28844307 hsa-miR-4655-5p 1 0 0
chr16:28844004|28844307 hsa-miR-7845-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6716-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6827-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6798-5p 1 1 0
chr16:28844004|28844307 hsa-miR-6760-5p 1 1 0
chr16:28844004|28844307 hsa-miR-6881-5p 1 1 0
chr16:28844004|28844307 hsa-miR-6850-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6858-3p 1 1 0
chr16:28844004|28844307 hsa-miR-1343-3p 1 1 0
chr16:28844004|28844307 hsa-miR-1226-5p 1 0 0
chr16:28844004|28844307 hsa-miR-4793-5p 1 0 0
chr16:28844004|28844307 hsa-miR-4640-5p 1 0 0
chr16:28844004|28844307 hsa-miR-3691-5p 1 0 0
chr16:28844004|28844307 hsa-miR-3191-5p 0 1 0
chr16:28844004|28844307 hsa-miR-4732-5p 1 0 0
chr16:28844004|28844307 hsa-miR-3202 0 1 0
chr16:28844004|28844307 hsa-miR-6878-3p 0 1 0
chr16:28844004|28844307 hsa-miR-5196-3p 1 0 0
chr16:28844004|28844307 hsa-miR-149-3p 1 0 0
chr16:28844004|28844307 hsa-miR-6824-5p 1 0 0
chr16:28844004|28844307 hsa-miR-3162-5p 1 1 0
chr16:28844004|28844307 hsa-miR-6877-5p 1 0 0
chr16:28844004|28844307 hsa-miR-7160-3p 0 1 0
chr16:28844004|28844307 hsa-miR-7846-3p 1 0 0
chr16:28844004|28844307 hsa-miR-4707-5p 1 0 0
chr16:28844004|28844307 hsa-miR-5571-3p 0 1 0
chr16:28844004|28844307 hsa-miR-605-3p 0 1 0
chr16:28844004|28844307 hsa-miR-483-5p 1 0 0
chr16:28844004|28844307 hsa-miR-3670 1 1 0
chr16:28844004|28844307 hsa-miR-3173-5p 0 1 0
chr16:28844004|28844307 hsa-miR-6780b-3p 1 0 0
chr16:28844004|28844307 hsa-miR-124-3p 0 1 0
chr16:28844004|28844307 hsa-miR-1207-5p 1 0 0
chr16:28844004|28844307 hsa-miR-4763-3p 1 0 0
chr16:28844004|28844307 hsa-miR-6775-5p 0 1 0
chr16:28844004|28844307 hsa-miR-6743-5p 1 1 0
chr16:28844004|28844307 hsa-miR-6752-5p 1 0 0
chr16:28844004|28844307 hsa-miR-1249-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6722-3p 1 0 0
chr16:28844004|28844307 hsa-miR-6779-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6788-5p 1 1 0
chr16:28844004|28844307 hsa-miR-6797-5p 1 1 0
chr16:28844004|28844307 hsa-miR-6808-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6879-5p 1 0 0
chr16:28844004|28844307 hsa-miR-3127-3p 0 1 0
chr16:28844004|28844307 hsa-miR-4728-5p 1 0 0
chr16:28844004|28844307 hsa-miR-5196-5p 1 1 0
chr16:28844004|28844307 hsa-miR-6780b-5p 1 0 0
chr16:28844004|28844307 hsa-miR-10392-5p 1 0 0
chr16:28844004|28844307 hsa-miR-4685-5p 0 1 0
chr16:28844004|28844307 hsa-miR-4725-3p 1 0 0
chr16:28844004|28844307 hsa-miR-4749-5p 1 0 0
chr16:28844004|28844307 hsa-miR-675-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6794-5p 1 0 0
chr16:28844004|28844307 hsa-miR-4769-5p 0 1 0
chr16:28844004|28844307 hsa-miR-6511a-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6758-5p 1 0 0
chr16:28844004|28844307 hsa-miR-6876-5p 0 1 0
chr16:28844004|28844307 hsa-miR-6891-5p 1 0 0
chr16:28844004|28844307 hsa-miR-4716-3p 1 1 0
chr16:28844004|28844307 hsa-miR-769-3p 1 1 0
chr16:28844004|28844307 hsa-miR-10401-3p 1 0 0
chr16:28844004|28844307 hsa-miR-6837-5p 0 1 0
chr16:28844004|28844307 hsa-miR-6775-3p 0 1 0
chr16:28844004|28844307 hsa-miR-10392-3p 1 0 0
chr16:28844004|28844307 hsa-miR-4756-5p 1 0 0
chr16:28844004|28844307 hsa-miR-103a-1-5p 1 1 0
chr16:28844004|28844307 hsa-miR-7156-5p 0 1 0
chr16:28844004|28844307 hsa-miR-655-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:28844004|28844307
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MESRAWLKGGLTPADPLCLPSVSHSPSFSLLLFPFRPRH
Nucleotide Sequence CTGGAGAGCAGGGCCTGGCTGAAGGGTGGCCTTACCCCGGCAGATCCCTTGTGCCTTCCCTCTGTCTCACATTCGCCTTCCTTCTCCCTGCTCCTTTTCCCTTTCCGTCCTAGGCATTGA
CircID chr16:28844004|28844307
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MSHIRLPSPCSFSLSVLGIEMFHKSLERAEAGDNLGALVRGLKREDLRRG
Nucleotide Sequence CTGTCTCACATTCGCCTTCCTTCTCCCTGCTCCTTTTCCCTTTCCGTCCTAGGCATTGAGATGTTCCACAAGAGCCTGGAGAGGGCCGAGGCCGGAGATAACCTCGGGGCCCTGGTCCGAGGCTTGAAGCGGGAGGACTTGCGGCGGGGC
CircID chr16:28844004|28844307
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MGSQSGEQGLAEGWPYPGRSLVPSLCLTFAFLLPAPFPFPS
Nucleotide Sequence TTGGGAAGCCAGTCTGGAGAGCAGGGCCTGGCTGAAGGGTGGCCTTACCCCGGCAGATCCCTTGTGCCTTCCCTCTGTCTCACATTCGCCTTCCTTCTCCCTGCTCCTTTTCCCTTTCCGTCCTAG
CircID chr16:28844004|28844307
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MSPQCGCSCYVLGAHTRLPSLKCHAL
Nucleotide Sequence CTGTCACCACAGTGCGGATGTTCTTGCTATGTCCTAGGAGCTCACACTCGTCTCCCTTCTTTAAAATGCCACGCTCTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab