CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28844314|28844512
Strand -
CircType exon
Host Gene ENSG00000178952.7;
Algorism CIRI2;
Sequence CTGTCACCACGGTGCCACGGCCTGGGAGGGAATAAGACAGGATATCAGGGACCCCGAGCTAGGCTTCTGCTAGAGAGAGTGCGTGGGAACAGACAGAGTCCTCACCAGGGACGGAGTACACCGCCTCCACAGGCAGCAGGAAAGGCTTCTCCAGGTCCCGGGCGGGCACTGGGATGTAAGTGTCCACAGCATCCAGTAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28844314|28844512 hsa-miR-370-5p 0 0 1
chr16:28844314|28844512 hsa-miR-370-3p 0 0 1
chr16:28844314|28844512 hsa-miR-492 0 0 1
chr16:28844314|28844512 hsa-miR-619-5p 0 0 1
chr16:28844314|28844512 hsa-miR-619-3p 0 0 1
chr16:28844314|28844512 hsa-miR-631 0 0 1
chr16:28844314|28844512 hsa-miR-650 0 0 1
chr16:28844314|28844512 hsa-miR-662 0 0 1
chr16:28844314|28844512 hsa-miR-298 1 1 1
chr16:28844314|28844512 hsa-miR-1243 0 0 1
chr16:28844314|28844512 hsa-miR-1251-5p 0 0 1
chr16:28844314|28844512 hsa-miR-1251-3p 0 0 1
chr16:28844314|28844512 hsa-miR-1825 0 1 1
chr16:28844314|28844512 hsa-miR-1224-5p 0 1 1
chr16:28844314|28844512 hsa-miR-615-5p 1 1 1
chr16:28844314|28844512 hsa-miR-188-3p 0 0 1
chr16:28844314|28844512 hsa-miR-125a-5p 1 0 1
chr16:28844314|28844512 hsa-miR-542-3p 0 0 1
chr16:28844314|28844512 hsa-miR-521 0 1 1
chr16:28844314|28844512 hsa-miR-1260 0 0 1
chr16:28844314|28844512 hsa-miR-125b 0 0 1
chr16:28844314|28844512 hsa-miR-642 0 0 1
chr16:28844314|28844512 hsa-miR-661 1 0 0
chr16:28844314|28844512 hsa-miR-718 1 0 0
chr16:28844314|28844512 hsa-miR-3183 1 0 0
chr16:28844314|28844512 hsa-miR-3649 0 1 0
chr16:28844314|28844512 hsa-miR-4443 0 1 0
chr16:28844314|28844512 hsa-miR-4469 1 0 0
chr16:28844314|28844512 hsa-miR-4522 0 1 0
chr16:28844314|28844512 hsa-miR-4531 0 1 0
chr16:28844314|28844512 hsa-miR-4730 1 0 0
chr16:28844314|28844512 hsa-miR-6071 1 0 0
chr16:28844314|28844512 hsa-miR-7704 1 0 0
chr16:28844314|28844512 hsa-miR-12131 1 0 0
chr16:28844314|28844512 hsa-miR-6749-3p 1 0 0
chr16:28844314|28844512 hsa-miR-7155-5p 1 0 0
chr16:28844314|28844512 hsa-miR-1247-3p 0 1 0
chr16:28844314|28844512 hsa-miR-139-3p 1 0 0
chr16:28844314|28844512 hsa-miR-7114-5p 0 1 0
chr16:28844314|28844512 hsa-miR-6746-5p 1 0 0
chr16:28844314|28844512 hsa-miR-6727-5p 1 0 0
chr16:28844314|28844512 hsa-miR-23b-5p 1 1 0
chr16:28844314|28844512 hsa-miR-4728-3p 1 0 0
chr16:28844314|28844512 hsa-miR-1915-5p 1 0 0
chr16:28844314|28844512 hsa-miR-423-3p 1 0 0
chr16:28844314|28844512 hsa-miR-7855-5p 1 1 0
chr16:28844314|28844512 hsa-miR-1343-3p 1 0 0
chr16:28844314|28844512 hsa-miR-4763-5p 1 0 0
chr16:28844314|28844512 hsa-miR-4707-3p 0 1 0
chr16:28844314|28844512 hsa-miR-4786-3p 1 0 0
chr16:28844314|28844512 hsa-miR-7111-3p 1 0 0
chr16:28844314|28844512 hsa-miR-1237-3p 1 0 0
chr16:28844314|28844512 hsa-miR-3120-5p 1 1 0
chr16:28844314|28844512 hsa-miR-7106-3p 1 0 0
chr16:28844314|28844512 hsa-miR-4732-3p 1 0 0
chr16:28844314|28844512 hsa-miR-3074-5p 0 1 0
chr16:28844314|28844512 hsa-miR-518c-5p 1 0 0
chr16:28844314|28844512 hsa-miR-3124-3p 0 1 0
chr16:28844314|28844512 hsa-miR-541-5p 1 0 0
chr16:28844314|28844512 hsa-miR-670-5p 1 0 0
chr16:28844314|28844512 hsa-miR-6761-3p 0 1 0
chr16:28844314|28844512 hsa-miR-6888-3p 0 1 0
chr16:28844314|28844512 hsa-miR-3664-5p 0 1 0
chr16:28844314|28844512 hsa-miR-6775-5p 1 0 0
chr16:28844314|28844512 hsa-miR-4685-3p 1 0 0
chr16:28844314|28844512 hsa-miR-4755-5p 0 1 0
chr16:28844314|28844512 hsa-miR-7107-3p 1 1 0
chr16:28844314|28844512 hsa-miR-6893-3p 1 1 0
chr16:28844314|28844512 hsa-miR-6876-3p 0 1 0
chr16:28844314|28844512 hsa-miR-6827-3p 1 0 0
chr16:28844314|28844512 hsa-miR-4661-5p 1 0 0
chr16:28844314|28844512 hsa-miR-5699-3p 0 1 0
chr16:28844314|28844512 hsa-miR-550a-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:28844314|28844512
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence LSPRCHGLGGNKTGYQGPRARLLLERVRGNRQSPHQGRSTPPPQAAGKASPGPGRALGCKCPQHPV
Nucleotide Sequence CTGTCACCACGGTGCCACGGCCTGGGAGGGAATAAGACAGGATATCAGGGACCCCGAGCTAGGCTTCTGCTAGAGAGAGTGCGTGGGAACAGACAGAGTCCTCACCAGGGACGGAGTACACCGCCTCCACAGGCAGCAGGAAAGGCTTCTCCAGGTCCCGGGCGGGCACTGGGATGTAAGTGTCCACAGCATCCAGTA
CircID chr16:28844314|28844512
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MDAVDTYIPVPARDLEKPFLLPVEAVYSVPGEDSVCSHALSLAEA
Nucleotide Sequence CTGGATGCTGTGGACACTTACATCCCAGTGCCCGCCCGGGACCTGGAGAAGCCTTTCCTGCTGCCTGTGGAGGCGGTGTACTCCGTCCCTGGTGAGGACTCTGTCTGTTCCCACGCACTCTCTCTAGCAGAAGCCTAG
CircID chr16:28844314|28844512
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MLWTLTSQCPPGTWRSLSCCLWRRCTPSLVRTLSVPTHSL
Nucleotide Sequence ATGCTGTGGACACTTACATCCCAGTGCCCGCCCGGGACCTGGAGAAGCCTTTCCTGCTGCCTGTGGAGGCGGTGTACTCCGTCCCTGGTGAGGACTCTGTCTGTTCCCACGCACTCTCTCTAG
CircID chr16:28844314|28844512
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence LSPRCHGQGRSTPPPQAAGKASPGPGRALGCKCPQHPV
Nucleotide Sequence CTGTCACCACGGTGCCACGGCCAGGGACGGAGTACACCGCCTCCACAGGCAGCAGGAAAGGCTTCTCCAGGTCCCGGGCGGGCACTGGGATGTAAGTGTCCACAGCATCCAGTA
CircID chr16:28844314|28844512
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVVT
Nucleotide Sequence CTGGATGCTGTGGACACTTACATCCCAGTGCCCGCCCGGGACCTGGAGAAGCCTTTCCTGCTGCCTGTGGAGGCGGTGTACTCCGTCCCTGGCCGTGGCACCGTGGTGACA
CircID chr16:28844314|28844512
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MLWTLTSQCPPGTWRSLSCCLWRRCTPSLAVAPW
Nucleotide Sequence ATGCTGTGGACACTTACATCCCAGTGCCCGCCCGGGACCTGGAGAAGCCTTTCCTGCTGCCTGTGGAGGCGGTGTACTCCGTCCCTGGCCGTGGCACCGTGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab