CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28844419|28844744
Strand -
CircType exon
Host Gene ENSG00000178952.7;
Algorism CIRI2;
Sequence CAGGGACGGAGTACACCGCCTCCACAGGCAGCAGGAAAGGCTTCTCCAGGTCCCGGGCGGGCACTGGGATGTAAGTGTCCACAGCATCCAGTAGCTTCTGCACAGACTTCAGGCCTAACTCAGGGTCCCGACCCTGTTGAGGGGAAGTGCCAGGACTCTGAAATCCCCATTCTACTTCCCTCGATTATCAAGAGCCACTTCCCAGACACAAAGCAGAGCTCTGGGTGCCCATCCAGCCCCACCCTCTGCAGCAGCTGCCCTGCCTGACCCCGCGTTCACCTCAAGGGCACAGAGAGCAGAGCCTACGATGACTGGGGTCTCCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28844419|28844744 hsa-miR-370-5p 0 0 1
chr16:28844419|28844744 hsa-miR-370-3p 0 0 1
chr16:28844419|28844744 hsa-miR-492 0 0 1
chr16:28844419|28844744 hsa-miR-504-5p 0 0 1
chr16:28844419|28844744 hsa-miR-504-3p 0 0 1
chr16:28844419|28844744 hsa-miR-592 0 0 1
chr16:28844419|28844744 hsa-miR-599 0 0 1
chr16:28844419|28844744 hsa-miR-619-5p 0 0 1
chr16:28844419|28844744 hsa-miR-619-3p 0 0 1
chr16:28844419|28844744 hsa-miR-631 0 0 1
chr16:28844419|28844744 hsa-miR-650 0 0 1
chr16:28844419|28844744 hsa-miR-421 0 0 1
chr16:28844419|28844744 hsa-miR-765 0 0 1
chr16:28844419|28844744 hsa-miR-298 1 0 1
chr16:28844419|28844744 hsa-miR-760 1 1 1
chr16:28844419|28844744 hsa-miR-938 0 0 1
chr16:28844419|28844744 hsa-miR-940 0 1 1
chr16:28844419|28844744 hsa-miR-1231 0 0 1
chr16:28844419|28844744 hsa-miR-1287-5p 0 0 1
chr16:28844419|28844744 hsa-miR-1287-3p 0 0 1
chr16:28844419|28844744 hsa-miR-1243 0 0 1
chr16:28844419|28844744 hsa-miR-1825 0 1 1
chr16:28844419|28844744 hsa-miR-767-3p 0 0 1
chr16:28844419|28844744 hsa-miR-1207-5p 1 1 1
chr16:28844419|28844744 hsa-miR-125a-5p 0 0 1
chr16:28844419|28844744 hsa-miR-876-5p 0 0 1
chr16:28844419|28844744 hsa-miR-886-5p 0 0 1
chr16:28844419|28844744 hsa-miR-125b 0 0 1
chr16:28844419|28844744 hsa-miR-1295 0 0 1
chr16:28844419|28844744 hsa-miR-596 1 0 0
chr16:28844419|28844744 hsa-miR-612 1 0 0
chr16:28844419|28844744 hsa-miR-661 1 0 0
chr16:28844419|28844744 hsa-miR-663a 1 0 0
chr16:28844419|28844744 hsa-miR-762 1 0 0
chr16:28844419|28844744 hsa-miR-1538 1 0 0
chr16:28844419|28844744 hsa-miR-544b 0 1 0
chr16:28844419|28844744 hsa-miR-3147 1 0 0
chr16:28844419|28844744 hsa-miR-3155a 1 0 0
chr16:28844419|28844744 hsa-miR-3167 0 1 0
chr16:28844419|28844744 hsa-miR-3188 1 0 0
chr16:28844419|28844744 hsa-miR-4314 0 1 0
chr16:28844419|28844744 hsa-miR-4319 0 1 0
chr16:28844419|28844744 hsa-miR-4259 0 1 0
chr16:28844419|28844744 hsa-miR-3649 0 1 0
chr16:28844419|28844744 hsa-miR-3937 1 0 0
chr16:28844419|28844744 hsa-miR-4443 0 1 0
chr16:28844419|28844744 hsa-miR-4450 0 1 0
chr16:28844419|28844744 hsa-miR-3155b 1 0 0
chr16:28844419|28844744 hsa-miR-4488 1 0 0
chr16:28844419|28844744 hsa-miR-4492 0 1 0
chr16:28844419|28844744 hsa-miR-4498 0 1 0
chr16:28844419|28844744 hsa-miR-2392 1 0 0
chr16:28844419|28844744 hsa-miR-4510 1 0 0
chr16:28844419|28844744 hsa-miR-4531 0 1 0
chr16:28844419|28844744 hsa-miR-3960 1 0 0
chr16:28844419|28844744 hsa-miR-4654 1 0 0
chr16:28844419|28844744 hsa-miR-4669 1 1 0
chr16:28844419|28844744 hsa-miR-4674 1 0 0
chr16:28844419|28844744 hsa-miR-4682 0 1 0
chr16:28844419|28844744 hsa-miR-4688 1 0 0
chr16:28844419|28844744 hsa-miR-4692 0 1 0
chr16:28844419|28844744 hsa-miR-4706 1 0 0
chr16:28844419|28844744 hsa-miR-4739 1 0 0
chr16:28844419|28844744 hsa-miR-4784 0 1 0
chr16:28844419|28844744 hsa-miR-5090 1 1 0
chr16:28844419|28844744 hsa-miR-5572 1 0 0
chr16:28844419|28844744 hsa-miR-5698 1 0 0
chr16:28844419|28844744 hsa-miR-6085 1 0 0
chr16:28844419|28844744 hsa-miR-6088 1 0 0
chr16:28844419|28844744 hsa-miR-6127 1 0 0
chr16:28844419|28844744 hsa-miR-6133 1 0 0
chr16:28844419|28844744 hsa-miR-6860 1 0 0
chr16:28844419|28844744 hsa-miR-135a-3p 1 0 0
chr16:28844419|28844744 hsa-miR-1247-3p 0 1 0
chr16:28844419|28844744 hsa-miR-3194-3p 1 1 0
chr16:28844419|28844744 hsa-miR-6765-5p 1 0 0
chr16:28844419|28844744 hsa-miR-3150a-3p 1 0 0
chr16:28844419|28844744 hsa-miR-6861-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6894-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6857-5p 1 1 0
chr16:28844419|28844744 hsa-miR-3692-5p 1 0 0
chr16:28844419|28844744 hsa-miR-7114-5p 1 1 0
chr16:28844419|28844744 hsa-miR-6873-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6880-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6746-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6727-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6817-3p 0 1 0
chr16:28844419|28844744 hsa-miR-1915-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6845-3p 1 1 0
chr16:28844419|28844744 hsa-miR-6742-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6716-5p 1 0 0
chr16:28844419|28844744 hsa-miR-3151-5p 1 1 0
chr16:28844419|28844744 hsa-miR-6793-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6796-5p 0 1 0
chr16:28844419|28844744 hsa-miR-6829-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6732-5p 1 1 0
chr16:28844419|28844744 hsa-miR-2467-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6798-5p 1 0 0
chr16:28844419|28844744 hsa-miR-2467-3p 0 1 0
chr16:28844419|28844744 hsa-miR-6728-3p 0 1 0
chr16:28844419|28844744 hsa-miR-6810-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6735-3p 1 0 0
chr16:28844419|28844744 hsa-miR-345-3p 1 0 0
chr16:28844419|28844744 hsa-miR-6786-5p 1 1 0
chr16:28844419|28844744 hsa-miR-1226-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6740-5p 1 0 0
chr16:28844419|28844744 hsa-miR-4763-5p 1 0 0
chr16:28844419|28844744 hsa-miR-4707-3p 0 1 0
chr16:28844419|28844744 hsa-miR-4640-5p 1 0 0
chr16:28844419|28844744 hsa-miR-3677-3p 1 1 0
chr16:28844419|28844744 hsa-miR-6749-5p 1 0 0
chr16:28844419|28844744 hsa-miR-7854-3p 0 1 0
chr16:28844419|28844744 hsa-miR-3648 1 0 0
chr16:28844419|28844744 hsa-miR-4787-5p 1 0 0
chr16:28844419|28844744 hsa-miR-1266-3p 1 0 0
chr16:28844419|28844744 hsa-miR-7112-5p 1 1 0
chr16:28844419|28844744 hsa-miR-6828-3p 1 1 0
chr16:28844419|28844744 hsa-miR-744-5p 1 0 0
chr16:28844419|28844744 hsa-miR-3074-5p 0 1 0
chr16:28844419|28844744 hsa-miR-4795-5p 0 1 0
chr16:28844419|28844744 hsa-miR-3124-3p 0 1 0
chr16:28844419|28844744 hsa-miR-10400-5p 1 0 0
chr16:28844419|28844744 hsa-miR-4763-3p 1 1 0
chr16:28844419|28844744 hsa-miR-6769b-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6787-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6812-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6816-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6893-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6775-5p 1 0 0
chr16:28844419|28844744 hsa-miR-1343-5p 1 0 0
chr16:28844419|28844744 hsa-miR-5001-5p 0 1 0
chr16:28844419|28844744 hsa-miR-6754-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6756-5p 1 1 0
chr16:28844419|28844744 hsa-miR-6769a-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6803-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6813-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6819-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6851-5p 0 1 0
chr16:28844419|28844744 hsa-miR-10401-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6722-3p 1 0 0
chr16:28844419|28844744 hsa-miR-6751-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6763-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6797-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6808-5p 1 1 0
chr16:28844419|28844744 hsa-miR-6879-5p 1 0 0
chr16:28844419|28844744 hsa-miR-3620-5p 1 0 0
chr16:28844419|28844744 hsa-miR-5196-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6836-5p 0 1 0
chr16:28844419|28844744 hsa-miR-10396a-5p 1 0 0
chr16:28844419|28844744 hsa-miR-1909-3p 1 0 0
chr16:28844419|28844744 hsa-miR-328-5p 1 0 0
chr16:28844419|28844744 hsa-miR-3689a-3p 1 0 0
chr16:28844419|28844744 hsa-miR-4632-5p 1 1 0
chr16:28844419|28844744 hsa-miR-4745-5p 1 0 0
chr16:28844419|28844744 hsa-miR-4749-5p 1 1 0
chr16:28844419|28844744 hsa-miR-6735-5p 1 1 0
chr16:28844419|28844744 hsa-miR-675-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6846-5p 1 1 0
chr16:28844419|28844744 hsa-miR-6848-5p 1 1 0
chr16:28844419|28844744 hsa-miR-6883-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6889-5p 1 0 0
chr16:28844419|28844744 hsa-miR-939-5p 1 0 0
chr16:28844419|28844744 hsa-miR-4758-5p 1 0 0
chr16:28844419|28844744 hsa-miR-5008-3p 1 0 0
chr16:28844419|28844744 hsa-miR-4646-5p 1 1 0
chr16:28844419|28844744 hsa-miR-6791-5p 1 0 0
chr16:28844419|28844744 hsa-miR-6893-3p 1 1 0
chr16:28844419|28844744 hsa-miR-6805-3p 1 0 0
chr16:28844419|28844744 hsa-miR-1295b-5p 0 1 0
chr16:28844419|28844744 hsa-miR-10397-5p 1 0 0
chr16:28844419|28844744 hsa-miR-7157-3p 1 0 0
chr16:28844419|28844744 hsa-miR-1912-3p 0 1 0
chr16:28844419|28844744 hsa-miR-147b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:28844419|28844744
ORF Type ORF1
Protein Length 67
Nucleotide Length 204
Protein Sequence MGCKCPQHPVASAQTSGLTQGPDPVEGKCQDSEIPILLPSIIKSHFPDTKQSSGCPSSPTLCSSCPA
Nucleotide Sequence CTGGGATGTAAGTGTCCACAGCATCCAGTAGCTTCTGCACAGACTTCAGGCCTAACTCAGGGTCCCGACCCTGTTGAGGGGAAGTGCCAGGACTCTGAAATCCCCATTCTACTTCCCTCGATTATCAAGAGCCACTTCCCAGACACAAAGCAGAGCTCTGGGTGCCCATCCAGCCCCACCCTCTGCAGCAGCTGCCCTGCCTGA
CircID chr16:28844419|28844744
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MLRGSARTLKSPFYFPRLSRATSQTQSRALGAHPAPPSAAAALPDPAFTSRAQRAEPTMTGVSS
Nucleotide Sequence CTGTTGAGGGGAAGTGCCAGGACTCTGAAATCCCCATTCTACTTCCCTCGATTATCAAGAGCCACTTCCCAGACACAAAGCAGAGCTCTGGGTGCCCATCCAGCCCCACCCTCTGCAGCAGCTGCCCTGCCTGACCCCGCGTTCACCTCAAGGGCACAGAGAGCAGAGCCTACGATGACTGGGGTCTCCTCC
CircID chr16:28844419|28844744
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MLQRVGLDGHPELCFVSGKWLLIIEGSRMGISESWHFPSTGSGP
Nucleotide Sequence CTGCTGCAGAGGGTGGGGCTGGATGGGCACCCAGAGCTCTGCTTTGTGTCTGGGAAGTGGCTCTTGATAATCGAGGGAAGTAGAATGGGGATTTCAGAGTCCTGGCACTTCCCCTCAACAGGGTCGGGACCCTGA
CircID chr16:28844419|28844744
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVP
Nucleotide Sequence CTGAAGTCTGTGCAGAAGCTACTGGATGCTGTGGACACTTACATCCCAGTGCCCGCCCGGGACCTGGAGAAGCCTTTCCTGCTGCCTGTGGAGGCGGTGTACTCCGTCCCT
CircID chr16:28844419|28844744
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MCRSYWMLWTLTSQCPPGTWRSLSCCLWRRCTPSL
Nucleotide Sequence CTGTGCAGAAGCTACTGGATGCTGTGGACACTTACATCCCAGTGCCCGCCCGGGACCTGGAGAAGCCTTTCCTGCTGCCTGTGGAGGCGGTGTACTCCGTCCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab