CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28873558|28873721
Strand +
CircType exon
Host Gene ENSG00000178188.13;
Algorism CIRI2;
Sequence CCCCGCGTCCCCACCAGACCCAGCGCCCTGGGCCTCTGAGCCTGGGGCTATGGCCTCTTCCAATTCAACCACGGGGACCAGCTCAACCACGGGGACCAGCTCTTCCGGGACCCCTCCACCGCCCGCTTTCTCTTTCTCTTGCCTCTCTTTGGCTGCTGCGGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28873558|28873721 hsa-miR-31-5p 0 0 1
chr16:28873558|28873721 hsa-miR-31-3p 0 0 1
chr16:28873558|28873721 hsa-miR-484 0 1 1
chr16:28873558|28873721 hsa-miR-558 0 0 1
chr16:28873558|28873721 hsa-miR-563 0 0 1
chr16:28873558|28873721 hsa-miR-541-5p 0 0 1
chr16:28873558|28873721 hsa-miR-541-3p 0 0 1
chr16:28873558|28873721 hsa-miR-491-5p 0 0 1
chr16:28873558|28873721 hsa-miR-615-5p 1 1 1
chr16:28873558|28873721 hsa-miR-193a-5p 0 0 1
chr16:28873558|28873721 hsa-miR-654-5p 0 0 1
chr16:28873558|28873721 hsa-miR-7 0 0 1
chr16:28873558|28873721 hsa-miR-219-2-3p 0 0 1
chr16:28873558|28873721 hsa-miR-24 0 0 1
chr16:28873558|28873721 hsa-miR-608 1 0 0
chr16:28873558|28873721 hsa-miR-658 1 0 0
chr16:28873558|28873721 hsa-miR-762 1 0 0
chr16:28873558|28873721 hsa-miR-760 1 0 0
chr16:28873558|28873721 hsa-miR-3125 1 0 0
chr16:28873558|28873721 hsa-miR-3137 1 0 0
chr16:28873558|28873721 hsa-miR-3197 1 0 0
chr16:28873558|28873721 hsa-miR-4281 1 1 0
chr16:28873558|28873721 hsa-miR-3612 1 0 0
chr16:28873558|28873721 hsa-miR-3651 0 1 0
chr16:28873558|28873721 hsa-miR-3916 1 1 0
chr16:28873558|28873721 hsa-miR-1268b 1 0 0
chr16:28873558|28873721 hsa-miR-4428 1 0 0
chr16:28873558|28873721 hsa-miR-4487 0 1 0
chr16:28873558|28873721 hsa-miR-1587 1 0 0
chr16:28873558|28873721 hsa-miR-3960 1 0 0
chr16:28873558|28873721 hsa-miR-4688 1 0 0
chr16:28873558|28873721 hsa-miR-4739 1 0 0
chr16:28873558|28873721 hsa-miR-4767 1 0 0
chr16:28873558|28873721 hsa-miR-5194 1 1 0
chr16:28873558|28873721 hsa-miR-6077 0 1 0
chr16:28873558|28873721 hsa-miR-6131 0 1 0
chr16:28873558|28873721 hsa-miR-6133 1 0 0
chr16:28873558|28873721 hsa-miR-6165 1 0 0
chr16:28873558|28873721 hsa-miR-9901 1 0 0
chr16:28873558|28873721 hsa-miR-12122 1 0 0
chr16:28873558|28873721 hsa-miR-6809-5p 1 0 0
chr16:28873558|28873721 hsa-miR-3926 1 0 0
chr16:28873558|28873721 hsa-miR-6515-5p 1 1 0
chr16:28873558|28873721 hsa-miR-6089 1 0 0
chr16:28873558|28873721 hsa-miR-7847-3p 1 1 0
chr16:28873558|28873721 hsa-miR-4695-5p 1 0 0
chr16:28873558|28873721 hsa-miR-4722-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6842-3p 1 0 0
chr16:28873558|28873721 hsa-miR-7845-5p 1 0 0
chr16:28873558|28873721 hsa-miR-3663-5p 1 1 0
chr16:28873558|28873721 hsa-miR-6742-5p 1 0 0
chr16:28873558|28873721 hsa-miR-185-3p 1 0 0
chr16:28873558|28873721 hsa-miR-2467-3p 1 0 0
chr16:28873558|28873721 hsa-miR-6874-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6821-5p 1 0 0
chr16:28873558|28873721 hsa-miR-5008-5p 0 1 0
chr16:28873558|28873721 hsa-miR-6786-5p 1 1 0
chr16:28873558|28873721 hsa-miR-6763-3p 1 0 0
chr16:28873558|28873721 hsa-miR-3944-3p 1 0 0
chr16:28873558|28873721 hsa-miR-4640-5p 1 0 0
chr16:28873558|28873721 hsa-miR-3648 1 0 0
chr16:28873558|28873721 hsa-miR-149-3p 1 0 0
chr16:28873558|28873721 hsa-miR-3925-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6828-5p 1 0 0
chr16:28873558|28873721 hsa-miR-103b 0 1 0
chr16:28873558|28873721 hsa-miR-423-5p 1 1 0
chr16:28873558|28873721 hsa-miR-7152-3p 0 1 0
chr16:28873558|28873721 hsa-miR-4750-5p 1 0 0
chr16:28873558|28873721 hsa-miR-214-3p 1 1 0
chr16:28873558|28873721 hsa-miR-4444 1 0 0
chr16:28873558|28873721 hsa-miR-4763-3p 1 0 0
chr16:28873558|28873721 hsa-miR-6787-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6893-5p 1 0 0
chr16:28873558|28873721 hsa-miR-5001-5p 1 1 0
chr16:28873558|28873721 hsa-miR-6737-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6743-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6754-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6756-5p 1 0 0
chr16:28873558|28873721 hsa-miR-1249-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6797-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6808-5p 1 0 0
chr16:28873558|28873721 hsa-miR-1915-3p 1 1 0
chr16:28873558|28873721 hsa-miR-3620-5p 1 0 0
chr16:28873558|28873721 hsa-miR-5196-5p 1 0 0
chr16:28873558|28873721 hsa-miR-1237-5p 1 0 0
chr16:28873558|28873721 hsa-miR-4685-5p 1 1 0
chr16:28873558|28873721 hsa-miR-4726-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6738-5p 1 1 0
chr16:28873558|28873721 hsa-miR-6831-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6845-5p 1 0 0
chr16:28873558|28873721 hsa-miR-939-5p 1 0 0
chr16:28873558|28873721 hsa-miR-1238-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6731-5p 1 0 0
chr16:28873558|28873721 hsa-miR-6739-5p 1 1 0
chr16:28873558|28873721 hsa-miR-6758-5p 0 1 0
chr16:28873558|28873721 hsa-miR-6856-5p 1 0 0
chr16:28873558|28873721 hsa-miR-1914-3p 1 1 0
chr16:28873558|28873721 hsa-miR-10398-3p 1 0 0
chr16:28873558|28873721 hsa-miR-6775-3p 1 0 0
chr16:28873558|28873721 hsa-miR-6764-5p 0 1 0
chr16:28873558|28873721 hsa-miR-6838-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:28873558|28873721
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MASSNSTTGTSSTTGTSSSGTPPPPAFSFSCLSLAAAA
Nucleotide Sequence ATGGCCTCTTCCAATTCAACCACGGGGACCAGCTCAACCACGGGGACCAGCTCTTCCGGGACCCCTCCACCGCCCGCTTTCTCTTTCTCTTGCCTCTCTTTGGCTGCTGCGGCT
CircID chr16:28873558|28873721
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MSLGLWPLPIQPRGPAQPRGPALPGPLHRPLSLSLASLWLLRL
Nucleotide Sequence CTGAGCCTGGGGCTATGGCCTCTTCCAATTCAACCACGGGGACCAGCTCAACCACGGGGACCAGCTCTTCCGGGACCCCTCCACCGCCCGCTTTCTCTTTCTCTTGCCTCTCTTTGGCTGCTGCGGCTG
CircID chr16:28873558|28873721
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MVPVVELVPVVELEEAIAPGSEAQGAGSGGDAG
Nucleotide Sequence CTGGTCCCCGTGGTTGAGCTGGTCCCCGTGGTTGAATTGGAAGAGGCCATAGCCCCAGGCTCAGAGGCCCAGGGCGCTGGGTCTGGTGGGGACGCGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab