CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28873790|28873995
Strand +
CircType exon
Host Gene ENSG00000178188.13;
Algorism CIRI2;
Sequence CTGTAGTGTGTGACGGGAGCCTCTCCCGAGCCTCTGCTTGTACCATCAAAGATGCCCTTGGCCAACAAGGGTCAGGAAGCATGGGGGAGGGATTTCGGCCTCCTCTGTCCCTACCCAGCCCAATCTCACGAGCAGGGCTGGGGGGTTTAAAAAGGGTGGAGCGGGTGGGGTTGGCTCACACGAAGGAGTACTGGTTGTTAATGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28873790|28873995 hsa-miR-377-5p 0 0 1
chr16:28873790|28873995 hsa-miR-377-3p 0 0 1
chr16:28873790|28873995 hsa-miR-504-5p 0 0 1
chr16:28873790|28873995 hsa-miR-504-3p 0 0 1
chr16:28873790|28873995 hsa-miR-588 0 0 1
chr16:28873790|28873995 hsa-miR-603 0 0 1
chr16:28873790|28873995 hsa-miR-605-5p 0 0 1
chr16:28873790|28873995 hsa-miR-605-3p 0 0 1
chr16:28873790|28873995 hsa-miR-1200 0 0 1
chr16:28873790|28873995 hsa-miR-1247-5p 0 0 1
chr16:28873790|28873995 hsa-miR-1247-3p 0 0 1
chr16:28873790|28873995 hsa-miR-770-5p 0 0 1
chr16:28873790|28873995 hsa-miR-361-3p 0 0 1
chr16:28873790|28873995 hsa-miR-516a-3p 0 0 1
chr16:28873790|28873995 hsa-miR-596 1 0 0
chr16:28873790|28873995 hsa-miR-298 1 0 0
chr16:28873790|28873995 hsa-miR-1260a 1 0 0
chr16:28873790|28873995 hsa-miR-1470 1 0 0
chr16:28873790|28873995 hsa-miR-1260b 1 0 0
chr16:28873790|28873995 hsa-miR-3943 1 0 0
chr16:28873790|28873995 hsa-miR-3972 1 0 0
chr16:28873790|28873995 hsa-miR-4688 1 0 0
chr16:28873790|28873995 hsa-miR-6749-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6879-3p 1 0 0
chr16:28873790|28873995 hsa-miR-766-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6881-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6089 1 0 0
chr16:28873790|28873995 hsa-miR-6840-5p 1 0 0
chr16:28873790|28873995 hsa-miR-2467-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6858-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6786-5p 1 0 0
chr16:28873790|28873995 hsa-miR-6772-3p 1 0 0
chr16:28873790|28873995 hsa-miR-4763-5p 1 0 0
chr16:28873790|28873995 hsa-miR-7108-3p 1 0 0
chr16:28873790|28873995 hsa-miR-4707-3p 1 0 0
chr16:28873790|28873995 hsa-miR-1229-5p 1 0 0
chr16:28873790|28873995 hsa-miR-4640-5p 1 0 0
chr16:28873790|28873995 hsa-miR-296-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6769a-3p 1 0 0
chr16:28873790|28873995 hsa-miR-4707-5p 1 0 0
chr16:28873790|28873995 hsa-miR-6804-3p 1 0 0
chr16:28873790|28873995 hsa-miR-4758-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6793-3p 1 0 0
chr16:28873790|28873995 hsa-miR-1224-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6814-5p 1 0 0
chr16:28873790|28873995 hsa-miR-6782-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6865-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6792-5p 1 0 0
chr16:28873790|28873995 hsa-miR-4749-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6777-3p 1 0 0
chr16:28873790|28873995 hsa-miR-1227-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6851-3p 1 0 0
chr16:28873790|28873995 hsa-miR-3620-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6798-3p 1 0 0
chr16:28873790|28873995 hsa-miR-1249-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6729-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6800-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6750-3p 1 0 0
chr16:28873790|28873995 hsa-miR-3162-3p 1 0 0
chr16:28873790|28873995 hsa-miR-1228-3p 1 0 0
chr16:28873790|28873995 hsa-miR-4763-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6775-5p 1 0 0
chr16:28873790|28873995 hsa-miR-6743-5p 1 0 0
chr16:28873790|28873995 hsa-miR-6756-5p 1 0 0
chr16:28873790|28873995 hsa-miR-6879-5p 1 0 0
chr16:28873790|28873995 hsa-miR-6862-5p 1 0 0
chr16:28873790|28873995 hsa-miR-1909-3p 1 0 0
chr16:28873790|28873995 hsa-miR-4649-5p 1 0 0
chr16:28873790|28873995 hsa-miR-6729-5p 1 0 0
chr16:28873790|28873995 hsa-miR-6756-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6784-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6862-3p 1 0 0
chr16:28873790|28873995 hsa-miR-6810-3p 1 0 0
chr16:28873790|28873995 hsa-miR-10400-3p 1 0 0
chr16:28873790|28873995 hsa-miR-7114-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:28873790|28873995
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MLVPSKMPLANKGQEAWGRDFGLLCPYPAQSHEQGWGV
Nucleotide Sequence CTGCTTGTACCATCAAAGATGCCCTTGGCCAACAAGGGTCAGGAAGCATGGGGGAGGGATTTCGGCCTCCTCTGTCCCTACCCAGCCCAATCTCACGAGCAGGGCTGGGGGGTTTAA
CircID chr16:28873790|28873995
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MYHQRCPWPTRVRKHGGGISASSVPTQPNLTSRAGGFKKGGAGGVGSHEGVLVVNG
Nucleotide Sequence TTGTACCATCAAAGATGCCCTTGGCCAACAAGGGTCAGGAAGCATGGGGGAGGGATTTCGGCCTCCTCTGTCCCTACCCAGCCCAATCTCACGAGCAGGGCTGGGGGGTTTAAAAAGGGTGGAGCGGGTGGGGTTGGCTCACACGAAGGAGTACTGGTTGTTAATGGC
CircID chr16:28873790|28873995
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MGEGFRPPLSLPSPISRAGLGGLKRVERVGLAHTKEYWLLMA
Nucleotide Sequence ATGGGGGAGGGATTTCGGCCTCCTCTGTCCCTACCCAGCCCAATCTCACGAGCAGGGCTGGGGGGTTTAAAAAGGGTGGAGCGGGTGGGGTTGGCTCACACGAAGGAGTACTGGTTGTTAATGGCC
CircID chr16:28873790|28873995
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MGRDRGGRNPSPMLPDPCWPRASLMVQAEARERLPSHTT
Nucleotide Sequence CTGGGTAGGGACAGAGGAGGCCGAAATCCCTCCCCCATGCTTCCTGACCCTTGTTGGCCAAGGGCATCTTTGATGGTACAAGCAGAGGCTCGGGAGAGGCTCCCGTCACACACTACA
CircID chr16:28873790|28873995
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MLVRLGWVGTEEAEIPPPCFLTLVGQGHL
Nucleotide Sequence CTGCTCGTGAGATTGGGCTGGGTAGGGACAGAGGAGGCCGAAATCCCTCCCCCATGCTTCCTGACCCTTGTTGGCCAAGGGCATCTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab