CircRNA Information

General Information
circRNA Basic Information
CircID chr16:2896523|2896771
Strand +
CircType exon
Host Gene ENSG00000162076.11;
Algorism CIRI2;
Sequence CTGGGTCCTGCCTGCTCCGTTTCTGCTCAGGCTCCTGAGGGGCTGCCTCAATGGCCCGCTGGGCCTCGGGGTGGGTCTGGAGGAGGGCCTTGGCAAGGGTGGCGGGGCCGGGCACCCCCAGGGACATGACACAGTGCACACCCTTGCGCTTGGCCCCCGCCACCTTGGTGCTGTCTTTGGAGGCTGTGAGCAGGACCAGTTTGGAGAACTTTCTGGGCTTCCTGGGGGCTGCCGGGATGACTTCTGTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:2896523|2896771 hsa-miR-29a-5p 0 0 1
chr16:2896523|2896771 hsa-miR-29a-3p 0 0 1
chr16:2896523|2896771 hsa-miR-29c-5p 0 0 1
chr16:2896523|2896771 hsa-miR-29c-3p 0 0 1
chr16:2896523|2896771 hsa-miR-370-5p 0 0 1
chr16:2896523|2896771 hsa-miR-370-3p 0 0 1
chr16:2896523|2896771 hsa-miR-592 0 0 1
chr16:2896523|2896771 hsa-miR-597-5p 0 0 1
chr16:2896523|2896771 hsa-miR-597-3p 0 0 1
chr16:2896523|2896771 hsa-miR-637 0 0 1
chr16:2896523|2896771 hsa-miR-892a 0 0 1
chr16:2896523|2896771 hsa-miR-940 0 0 1
chr16:2896523|2896771 hsa-miR-1178-5p 0 0 1
chr16:2896523|2896771 hsa-miR-1178-3p 0 0 1
chr16:2896523|2896771 hsa-miR-1286 0 0 1
chr16:2896523|2896771 hsa-miR-1304-5p 0 0 1
chr16:2896523|2896771 hsa-miR-1304-3p 0 0 1
chr16:2896523|2896771 hsa-miR-1827 0 0 1
chr16:2896523|2896771 hsa-miR-671-5p 1 0 1
chr16:2896523|2896771 hsa-miR-361-3p 0 0 1
chr16:2896523|2896771 hsa-miR-767-3p 0 0 1
chr16:2896523|2896771 hsa-miR-342-5p 0 0 1
chr16:2896523|2896771 hsa-miR-582-3p 0 0 1
chr16:2896523|2896771 hsa-miR-515-5p 0 0 1
chr16:2896523|2896771 hsa-miR-663 0 0 1
chr16:2896523|2896771 hsa-miR-29b 0 0 1
chr16:2896523|2896771 hsa-miR-298 1 0 0
chr16:2896523|2896771 hsa-miR-3907 1 0 0
chr16:2896523|2896771 hsa-miR-4793-3p 1 0 0
chr16:2896523|2896771 hsa-miR-212-3p 1 0 0
chr16:2896523|2896771 hsa-miR-4763-3p 1 0 0
chr16:2896523|2896771 hsa-miR-6722-3p 1 0 0
chr16:2896523|2896771 hsa-miR-5189-5p 1 0 0
chr16:2896523|2896771 hsa-miR-1237-5p 1 0 0
chr16:2896523|2896771 hsa-miR-1909-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:2896523|2896771
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence LGPACSVSAQAPEGLPQWPAGPRGGSGGGPWQGWRGRAPPGT
Nucleotide Sequence CTGGGTCCTGCCTGCTCCGTTTCTGCTCAGGCTCCTGAGGGGCTGCCTCAATGGCCCGCTGGGCCTCGGGGTGGGTCTGGAGGAGGGCCTTGGCAAGGGTGGCGGGGCCGGGCACCCCCAGGGACATGA
CircID chr16:2896523|2896771
ORF Type ORF2
Protein Length 80
Nucleotide Length 240
Protein Sequence MPAPFLLRLLRGCLNGPLGLGVGLEEGLGKGGGAGHPQGHDTVHTLALGPRHLGAVFGGCEQDQFGELSGLPGGCRDDFC
Nucleotide Sequence CTGCCTGCTCCGTTTCTGCTCAGGCTCCTGAGGGGCTGCCTCAATGGCCCGCTGGGCCTCGGGGTGGGTCTGGAGGAGGGCCTTGGCAAGGGTGGCGGGGCCGGGCACCCCCAGGGACATGACACAGTGCACACCCTTGCGCTTGGCCCCCGCCACCTTGGTGCTGTCTTTGGAGGCTGTGAGCAGGACCAGTTTGGAGAACTTTCTGGGCTTCCTGGGGGCTGCCGGGATGACTTCTGT
CircID chr16:2896523|2896771
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MARWASGWVWRRALARVAGPGTPRDMTQCTPLRLAPATLVLSLEAVSRTSLENFLGFLGAAGMTSV
Nucleotide Sequence ATGGCCCGCTGGGCCTCGGGGTGGGTCTGGAGGAGGGCCTTGGCAAGGGTGGCGGGGCCGGGCACCCCCAGGGACATGACACAGTGCACACCCTTGCGCTTGGCCCCCGCCACCTTGGTGCTGTCTTTGGAGGCTGTGAGCAGGACCAGTTTGGAGAACTTTCTGGGCTTCCTGGGGGCTGCCGGGATGACTTCTGTG
CircID chr16:2896523|2896771
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MPRPSSRPTPRPSGPLRQPLRSLSRNGAGRTQ
Nucleotide Sequence TTGCCAAGGCCCTCCTCCAGACCCACCCCGAGGCCCAGCGGGCCATTGAGGCAGCCCCTCAGGAGCCTGAGCAGAAACGGAGCAGGCAGGACCCAG
CircID chr16:2896523|2896771
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MCHVPGGARPRHPCQGPPPDPPRGPAGH
Nucleotide Sequence CTGTGTCATGTCCCTGGGGGTGCCCGGCCCCGCCACCCTTGCCAAGGCCCTCCTCCAGACCCACCCCGAGGCCCAGCGGGCCATTGA
CircID chr16:2896523|2896771
ORF Type ORF6
Protein Length 66
Nucleotide Length 198
Protein Sequence MVLLTASKDSTKVAGAKRKGVHCVMSLGVPGPATLAKALLQTHPEAQRAIEAAPQEPEQKRSRQDP
Nucleotide Sequence CTGGTCCTGCTCACAGCCTCCAAAGACAGCACCAAGGTGGCGGGGGCCAAGCGCAAGGGTGTGCACTGTGTCATGTCCCTGGGGGTGCCCGGCCCCGCCACCCTTGCCAAGGCCCTCCTCCAGACCCACCCCGAGGCCCAGCGGGCCATTGAGGCAGCCCCTCAGGAGCCTGAGCAGAAACGGAGCAGGCAGGACCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab