CircRNA Information

General Information
circRNA Basic Information
CircID chr16:28989972|28990260
Strand +
CircType exon
Host Gene ENSG00000261067.5;
Algorism CIRI2;
Sequence CCCAGAGCCACTTCCAGCTGCCCAGCTCAGCCGTCCCAGGCAAGCCTGGTTCCAGGACAGACTCGGCCTCCACTGAAACACACCAGGGCAGGGAGGGATACGGATCAGGAGGCTGACGGGGTTCAGCAGGTACCCAGAGACAGAGGGACAAGCCAGAGGTAGGGTTGGGCAAGGGGGTCCTGGAGGGAAGGAGTAGAGCCTGTGGGCCCAGGGCAGGGTGGGGACAGGGCAGGCCTCTCACCAGGCCCTCAGTTCAGCTCCTGCAGATTCTCGTAATCTGGAGCCCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:28989972|28990260 hsa-miR-149-5p 0 0 1
chr16:28989972|28990260 hsa-miR-149-3p 0 0 1
chr16:28989972|28990260 hsa-miR-370-5p 0 0 1
chr16:28989972|28990260 hsa-miR-370-3p 0 0 1
chr16:28989972|28990260 hsa-miR-326 1 0 1
chr16:28989972|28990260 hsa-miR-484 0 0 1
chr16:28989972|28990260 hsa-miR-558 0 0 1
chr16:28989972|28990260 hsa-miR-593-5p 0 0 1
chr16:28989972|28990260 hsa-miR-593-3p 0 0 1
chr16:28989972|28990260 hsa-miR-612 1 0 1
chr16:28989972|28990260 hsa-miR-650 0 0 1
chr16:28989972|28990260 hsa-miR-661 1 0 1
chr16:28989972|28990260 hsa-miR-874-5p 0 0 1
chr16:28989972|28990260 hsa-miR-874-3p 0 0 1
chr16:28989972|28990260 hsa-miR-708-5p 0 0 1
chr16:28989972|28990260 hsa-miR-708-3p 0 0 1
chr16:28989972|28990260 hsa-miR-665 0 0 1
chr16:28989972|28990260 hsa-miR-760 1 0 1
chr16:28989972|28990260 hsa-miR-1205 0 0 1
chr16:28989972|28990260 hsa-miR-1286 0 0 1
chr16:28989972|28990260 hsa-miR-296-5p 1 0 1
chr16:28989972|28990260 hsa-miR-146b-3p 0 0 1
chr16:28989972|28990260 hsa-miR-339-5p 1 0 1
chr16:28989972|28990260 hsa-miR-1184 0 0 1
chr16:28989972|28990260 hsa-miR-1225-5p 0 0 1
chr16:28989972|28990260 hsa-miR-28-5p 0 0 1
chr16:28989972|28990260 hsa-miR-1207-3p 0 0 1
chr16:28989972|28990260 hsa-miR-188-5p 1 0 1
chr16:28989972|28990260 hsa-miR-330-5p 1 0 1
chr16:28989972|28990260 hsa-miR-642 0 0 1
chr16:28989972|28990260 hsa-miR-1285 0 0 1
chr16:28989972|28990260 hsa-miR-1254 0 0 1
chr16:28989972|28990260 hsa-miR-596 1 0 0
chr16:28989972|28990260 hsa-miR-611 1 0 0
chr16:28989972|28990260 hsa-miR-618 1 0 0
chr16:28989972|28990260 hsa-miR-623 1 0 0
chr16:28989972|28990260 hsa-miR-638 1 0 0
chr16:28989972|28990260 hsa-miR-762 1 0 0
chr16:28989972|28990260 hsa-miR-1231 1 0 0
chr16:28989972|28990260 hsa-miR-1470 1 0 0
chr16:28989972|28990260 hsa-miR-1913 1 0 0
chr16:28989972|28990260 hsa-miR-1976 1 0 0
chr16:28989972|28990260 hsa-miR-3147 1 0 0
chr16:28989972|28990260 hsa-miR-4313 1 0 0
chr16:28989972|28990260 hsa-miR-4326 1 0 0
chr16:28989972|28990260 hsa-miR-4268 1 0 0
chr16:28989972|28990260 hsa-miR-4487 1 0 0
chr16:28989972|28990260 hsa-miR-4489 1 0 0
chr16:28989972|28990260 hsa-miR-4492 1 0 0
chr16:28989972|28990260 hsa-miR-4497 1 0 0
chr16:28989972|28990260 hsa-miR-4498 1 0 0
chr16:28989972|28990260 hsa-miR-4505 1 0 0
chr16:28989972|28990260 hsa-miR-4507 1 0 0
chr16:28989972|28990260 hsa-miR-1587 1 0 0
chr16:28989972|28990260 hsa-miR-4539 1 0 0
chr16:28989972|28990260 hsa-miR-4656 1 0 0
chr16:28989972|28990260 hsa-miR-4721 1 0 0
chr16:28989972|28990260 hsa-miR-4741 1 0 0
chr16:28989972|28990260 hsa-miR-4780 1 0 0
chr16:28989972|28990260 hsa-miR-5787 1 0 0
chr16:28989972|28990260 hsa-miR-6131 1 0 0
chr16:28989972|28990260 hsa-miR-6860 1 0 0
chr16:28989972|28990260 hsa-miR-9898 1 0 0
chr16:28989972|28990260 hsa-miR-12115 1 0 0
chr16:28989972|28990260 hsa-miR-6749-3p 1 0 0
chr16:28989972|28990260 hsa-miR-93-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6747-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4665-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6861-5p 1 0 0
chr16:28989972|28990260 hsa-miR-4687-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4708-5p 1 0 0
chr16:28989972|28990260 hsa-miR-766-3p 1 0 0
chr16:28989972|28990260 hsa-miR-7851-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6089 1 0 0
chr16:28989972|28990260 hsa-miR-1225-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6820-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6875-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6842-3p 1 0 0
chr16:28989972|28990260 hsa-miR-138-1-3p 1 0 0
chr16:28989972|28990260 hsa-miR-3189-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6873-3p 1 0 0
chr16:28989972|28990260 hsa-miR-7110-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6726-3p 1 0 0
chr16:28989972|28990260 hsa-miR-1915-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6845-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6829-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6774-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6882-3p 1 0 0
chr16:28989972|28990260 hsa-miR-615-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4436b-5p 1 0 0
chr16:28989972|28990260 hsa-miR-1343-3p 1 0 0
chr16:28989972|28990260 hsa-miR-939-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6772-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4763-5p 1 0 0
chr16:28989972|28990260 hsa-miR-4707-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6803-3p 1 0 0
chr16:28989972|28990260 hsa-miR-7113-3p 1 0 0
chr16:28989972|28990260 hsa-miR-3667-3p 1 0 0
chr16:28989972|28990260 hsa-miR-3191-5p 1 0 0
chr16:28989972|28990260 hsa-miR-92b-5p 1 0 0
chr16:28989972|28990260 hsa-miR-4638-3p 1 0 0
chr16:28989972|28990260 hsa-miR-1266-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4446-5p 1 0 0
chr16:28989972|28990260 hsa-miR-4446-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4640-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4646-3p 1 0 0
chr16:28989972|28990260 hsa-miR-211-5p 1 0 0
chr16:28989972|28990260 hsa-miR-3120-5p 1 0 0
chr16:28989972|28990260 hsa-miR-3158-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4758-3p 1 0 0
chr16:28989972|28990260 hsa-miR-1910-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6782-3p 1 0 0
chr16:28989972|28990260 hsa-miR-3605-3p 1 0 0
chr16:28989972|28990260 hsa-miR-1296-5p 1 0 0
chr16:28989972|28990260 hsa-miR-1914-5p 1 0 0
chr16:28989972|28990260 hsa-miR-5088-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4749-3p 1 0 0
chr16:28989972|28990260 hsa-miR-328-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6859-3p 1 0 0
chr16:28989972|28990260 hsa-miR-502-5p 1 0 0
chr16:28989972|28990260 hsa-miR-204-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6748-3p 1 0 0
chr16:28989972|28990260 hsa-miR-5584-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6779-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6734-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6846-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6759-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6780b-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6732-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6731-3p 1 0 0
chr16:28989972|28990260 hsa-miR-10400-5p 1 0 0
chr16:28989972|28990260 hsa-miR-4763-3p 1 0 0
chr16:28989972|28990260 hsa-miR-5001-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6774-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6779-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6780a-5p 1 0 0
chr16:28989972|28990260 hsa-miR-3127-3p 1 0 0
chr16:28989972|28990260 hsa-miR-320a-5p 1 0 0
chr16:28989972|28990260 hsa-miR-4685-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4755-5p 1 0 0
chr16:28989972|28990260 hsa-miR-3620-5p 1 0 0
chr16:28989972|28990260 hsa-miR-1237-5p 1 0 0
chr16:28989972|28990260 hsa-miR-4632-5p 1 0 0
chr16:28989972|28990260 hsa-miR-4745-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6846-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6848-5p 1 0 0
chr16:28989972|28990260 hsa-miR-3187-5p 1 0 0
chr16:28989972|28990260 hsa-miR-939-5p 1 0 0
chr16:28989972|28990260 hsa-miR-10396a-3p 1 0 0
chr16:28989972|28990260 hsa-miR-10396b-3p 1 0 0
chr16:28989972|28990260 hsa-miR-5008-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6791-5p 1 0 0
chr16:28989972|28990260 hsa-miR-6753-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4722-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6893-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6756-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6792-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6862-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6801-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6805-3p 1 0 0
chr16:28989972|28990260 hsa-miR-10400-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6775-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6819-3p 1 0 0
chr16:28989972|28990260 hsa-miR-4768-5p 1 0 0
chr16:28989972|28990260 hsa-miR-4800-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6827-3p 1 0 0
chr16:28989972|28990260 hsa-miR-6824-3p 1 0 0
chr16:28989972|28990260 hsa-miR-3121-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:28989972|28990260
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MVPGQTRPPLKHTRAGRDTDQEADGVQQVPRDRGTSQR
Nucleotide Sequence CTGGTTCCAGGACAGACTCGGCCTCCACTGAAACACACCAGGGCAGGGAGGGATACGGATCAGGAGGCTGACGGGGTTCAGCAGGTACCCAGAGACAGAGGGACAAGCCAGAGGTAG
CircID chr16:28989972|28990260
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MTGFSRYPETEGQARGRVGQGGPGGKE
Nucleotide Sequence CTGACGGGGTTCAGCAGGTACCCAGAGACAGAGGGACAAGCCAGAGGTAGGGTTGGGCAAGGGGGTCCTGGAGGGAAGGAGTAG
CircID chr16:28989972|28990260
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MWAQGRVGTGQASHQALSSAPADSRNLEPP
Nucleotide Sequence CTGTGGGCCCAGGGCAGGGTGGGGACAGGGCAGGCCTCTCACCAGGCCCTCAGTTCAGCTCCTGCAGATTCTCGTAATCTGGAGCCCCCT
CircID chr16:28989972|28990260
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MPSSAVPGKPGSRTDSASTETHQGREGYGSGG
Nucleotide Sequence CTGCCCAGCTCAGCCGTCCCAGGCAAGCCTGGTTCCAGGACAGACTCGGCCTCCACTGAAACACACCAGGGCAGGGAGGGATACGGATCAGGAGGCTGA
CircID chr16:28989972|28990260
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MGKGVLEGRSRACGPRAGWGQGRPLTRPSVQLLQILVIWSP
Nucleotide Sequence TTGGGCAAGGGGGTCCTGGAGGGAAGGAGTAGAGCCTGTGGGCCCAGGGCAGGGTGGGGACAGGGCAGGCCTCTCACCAGGCCCTCAGTTCAGCTCCTGCAGATTCTCGTAATCTGGAGCCCC
CircID chr16:28989972|28990260
ORF Type ORF6
Protein Length 81
Nucleotide Length 243
Protein Sequence MVRGLPCPHPALGPQALLLPSRTPLPNPTSGLSLCLWVPAEPRQPPDPYPSLPWCVSVEAESVLEPGLPGTAELGSWKWLW
Nucleotide Sequence CTGGTGAGAGGCCTGCCCTGTCCCCACCCTGCCCTGGGCCCACAGGCTCTACTCCTTCCCTCCAGGACCCCCTTGCCCAACCCTACCTCTGGCTTGTCCCTCTGTCTCTGGGTACCTGCTGAACCCCGTCAGCCTCCTGATCCGTATCCCTCCCTGCCCTGGTGTGTTTCAGTGGAGGCCGAGTCTGTCCTGGAACCAGGCTTGCCTGGGACGGCTGAGCTGGGCAGCTGGAAGTGGCTCTGG
CircID chr16:28989972|28990260
ORF Type ORF7
Protein Length 72
Nucleotide Length 216
Protein Sequence MPWAHRLYSFPPGPPCPTLPLACPSVSGYLLNPVSLLIRIPPCPGVFQWRPSLSWNQACLGRLSWAAGSGSG
Nucleotide Sequence CTGCCCTGGGCCCACAGGCTCTACTCCTTCCCTCCAGGACCCCCTTGCCCAACCCTACCTCTGGCTTGTCCCTCTGTCTCTGGGTACCTGCTGAACCCCGTCAGCCTCCTGATCCGTATCCCTCCCTGCCCTGGTGTGTTTCAGTGGAGGCCGAGTCTGTCCTGGAACCAGGCTTGCCTGGGACGGCTGAGCTGGGCAGCTGGAAGTGGCTCTGGG
CircID chr16:28989972|28990260
ORF Type ORF8
Protein Length 34
Nucleotide Length 105
Protein Sequence MSPPCPGPTGSTPSLQDPLAQPYLWLVPLSLGTC
Nucleotide Sequence CTGTCCCCACCCTGCCCTGGGCCCACAGGCTCTACTCCTTCCCTCCAGGACCCCCTTGCCCAACCCTACCTCTGGCTTGTCCCTCTGTCTCTGGGTACCTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab