CircRNA Information

General Information
circRNA Basic Information
CircID chr16:29230365|29230563
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCCAGCCCTCACCTGTTTGACCGTCCCAAAGCCGGGGGTGGGAGCGGGAGGCTTTTGGCGAGGTCATGGAGGGAACAGGGTGGTGAGCCCGGCATGAAGGGCCCTTGCTGCAGGGTCCTTGGCCCTGCCCGGTGGAGAAGGGTCATGGGACATGCAGTCCGGCCTCACCTTTGGAGTCTCCACCAAGACAGCCGAGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:29230365|29230563 hsa-miR-107 0 0 1
chr16:29230365|29230563 hsa-miR-197-5p 0 0 1
chr16:29230365|29230563 hsa-miR-197-3p 0 0 1
chr16:29230365|29230563 hsa-miR-10a-5p 0 0 1
chr16:29230365|29230563 hsa-miR-10a-3p 0 0 1
chr16:29230365|29230563 hsa-miR-10b-5p 0 0 1
chr16:29230365|29230563 hsa-miR-10b-3p 0 0 1
chr16:29230365|29230563 hsa-miR-205-5p 0 0 1
chr16:29230365|29230563 hsa-miR-205-3p 0 0 1
chr16:29230365|29230563 hsa-miR-217-5p 0 0 1
chr16:29230365|29230563 hsa-miR-217-3p 0 0 1
chr16:29230365|29230563 hsa-miR-431-5p 0 0 1
chr16:29230365|29230563 hsa-miR-431-3p 0 0 1
chr16:29230365|29230563 hsa-miR-504-5p 0 0 1
chr16:29230365|29230563 hsa-miR-504-3p 0 0 1
chr16:29230365|29230563 hsa-miR-552-5p 0 0 1
chr16:29230365|29230563 hsa-miR-552-3p 0 0 1
chr16:29230365|29230563 hsa-miR-626 0 0 1
chr16:29230365|29230563 hsa-miR-1288-5p 0 0 1
chr16:29230365|29230563 hsa-miR-1288-3p 0 0 1
chr16:29230365|29230563 hsa-miR-125a-3p 0 1 1
chr16:29230365|29230563 hsa-miR-532-3p 0 1 1
chr16:29230365|29230563 hsa-miR-1184 0 1 1
chr16:29230365|29230563 hsa-miR-1224-3p 0 0 1
chr16:29230365|29230563 hsa-miR-1207-5p 0 0 1
chr16:29230365|29230563 hsa-miR-1302 0 0 1
chr16:29230365|29230563 hsa-miR-515-5p 0 0 1
chr16:29230365|29230563 hsa-miR-220b 0 0 1
chr16:29230365|29230563 hsa-miR-1260 0 0 1
chr16:29230365|29230563 hsa-miR-1280 0 0 1
chr16:29230365|29230563 hsa-miR-642 0 0 1
chr16:29230365|29230563 hsa-miR-103 0 0 1
chr16:29230365|29230563 hsa-miR-1274b 0 0 1
chr16:29230365|29230563 hsa-miR-762 0 1 0
chr16:29230365|29230563 hsa-miR-1260a 0 1 0
chr16:29230365|29230563 hsa-miR-1470 1 0 0
chr16:29230365|29230563 hsa-miR-3131 0 1 0
chr16:29230365|29230563 hsa-miR-1260b 0 1 0
chr16:29230365|29230563 hsa-miR-1193 0 1 0
chr16:29230365|29230563 hsa-miR-4284 0 1 0
chr16:29230365|29230563 hsa-miR-4710 0 1 0
chr16:29230365|29230563 hsa-miR-4741 1 0 0
chr16:29230365|29230563 hsa-miR-4666b 0 1 0
chr16:29230365|29230563 hsa-miR-6132 0 1 0
chr16:29230365|29230563 hsa-miR-6860 0 1 0
chr16:29230365|29230563 hsa-miR-17-3p 0 1 0
chr16:29230365|29230563 hsa-miR-6879-3p 1 0 0
chr16:29230365|29230563 hsa-miR-6836-3p 1 0 0
chr16:29230365|29230563 hsa-miR-4687-3p 1 0 0
chr16:29230365|29230563 hsa-miR-6892-3p 1 1 0
chr16:29230365|29230563 hsa-miR-6089 1 1 0
chr16:29230365|29230563 hsa-miR-433-3p 1 0 0
chr16:29230365|29230563 hsa-miR-4725-5p 0 1 0
chr16:29230365|29230563 hsa-miR-6788-3p 0 1 0
chr16:29230365|29230563 hsa-miR-7109-3p 0 1 0
chr16:29230365|29230563 hsa-miR-6786-5p 1 0 0
chr16:29230365|29230563 hsa-miR-4783-3p 1 0 0
chr16:29230365|29230563 hsa-miR-1266-3p 0 1 0
chr16:29230365|29230563 hsa-miR-4740-5p 1 0 0
chr16:29230365|29230563 hsa-miR-7112-5p 1 1 0
chr16:29230365|29230563 hsa-miR-6895-5p 0 1 0
chr16:29230365|29230563 hsa-miR-4707-5p 1 1 0
chr16:29230365|29230563 hsa-miR-4638-5p 0 1 0
chr16:29230365|29230563 hsa-miR-519d-5p 0 1 0
chr16:29230365|29230563 hsa-miR-6871-3p 1 0 0
chr16:29230365|29230563 hsa-miR-1914-5p 1 0 0
chr16:29230365|29230563 hsa-miR-5088-3p 0 1 0
chr16:29230365|29230563 hsa-miR-3184-3p 0 1 0
chr16:29230365|29230563 hsa-miR-6851-3p 0 1 0
chr16:29230365|29230563 hsa-miR-3620-3p 1 1 0
chr16:29230365|29230563 hsa-miR-4433b-5p 0 1 0
chr16:29230365|29230563 hsa-miR-6732-3p 1 1 0
chr16:29230365|29230563 hsa-miR-6790-3p 0 1 0
chr16:29230365|29230563 hsa-miR-4763-3p 0 1 0
chr16:29230365|29230563 hsa-miR-6816-5p 1 0 0
chr16:29230365|29230563 hsa-miR-6756-5p 1 0 0
chr16:29230365|29230563 hsa-miR-320a-5p 0 1 0
chr16:29230365|29230563 hsa-miR-4755-5p 1 1 0
chr16:29230365|29230563 hsa-miR-6836-5p 0 1 0
chr16:29230365|29230563 hsa-miR-1909-3p 1 0 0
chr16:29230365|29230563 hsa-miR-4726-5p 0 1 0
chr16:29230365|29230563 hsa-miR-5008-3p 1 0 0
chr16:29230365|29230563 hsa-miR-6511a-3p 0 1 0
chr16:29230365|29230563 hsa-miR-6792-3p 1 0 0
chr16:29230365|29230563 hsa-miR-10401-3p 1 1 0
chr16:29230365|29230563 hsa-miR-6511b-3p 0 1 0
chr16:29230365|29230563 hsa-miR-6819-3p 1 1 0
chr16:29230365|29230563 hsa-miR-6823-3p 1 1 0
chr16:29230365|29230563 hsa-miR-6797-3p 0 1 0
chr16:29230365|29230563 hsa-miR-6807-3p 0 1 0
chr16:29230365|29230563 hsa-miR-6834-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:29230365|29230563
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MLQGPWPCPVEKGHGTCSPASPLESPPRQPR
Nucleotide Sequence TTGCTGCAGGGTCCTTGGCCCTGCCCGGTGGAGAAGGGTCATGGGACATGCAGTCCGGCCTCACCTTTGGAGTCTCCACCAAGACAGCCGAGG
CircID chr16:29230365|29230563
ORF Type ORF2
Protein Length 62
Nucleotide Length 186
Protein Sequence MFDRPKAGGGSGRLLARSWREQGGEPGMKGPCCRVLGPARWRRVMGHAVRPHLWSLHQDSRG
Nucleotide Sequence CTGTTTGACCGTCCCAAAGCCGGGGGTGGGAGCGGGAGGCTTTTGGCGAGGTCATGGAGGGAACAGGGTGGTGAGCCCGGCATGAAGGGCCCTTGCTGCAGGGTCCTTGGCCCTGCCCGGTGGAGAAGGGTCATGGGACATGCAGTCCGGCCTCACCTTTGGAGTCTCCACCAAGACAGCCGAGGA
CircID chr16:29230365|29230563
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MTVPKPGVGAGGFWRGHGGNRVVSPA
Nucleotide Sequence TTGACCGTCCCAAAGCCGGGGGTGGGAGCGGGAGGCTTTTGGCGAGGTCATGGAGGGAACAGGGTGGTGAGCCCGGCATGA
CircID chr16:29230365|29230563
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MALPGGEGSWDMQSGLTFGVSTKTAE
Nucleotide Sequence TTGGCCCTGCCCGGTGGAGAAGGGTCATGGGACATGCAGTCCGGCCTCACCTTTGGAGTCTCCACCAAGACAGCCGAG
CircID chr16:29230365|29230563
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MVETPKVRPDCMSHDPSPPGRAKDPAARALHAGLTTLFPP
Nucleotide Sequence TTGGTGGAGACTCCAAAGGTGAGGCCGGACTGCATGTCCCATGACCCTTCTCCACCGGGCAGGGCCAAGGACCCTGCAGCAAGGGCCCTTCATGCCGGGCTCACCACCCTGTTCCCTCCATGA
CircID chr16:29230365|29230563
ORF Type ORF6
Protein Length 45
Nucleotide Length 138
Protein Sequence MTLLHRAGPRTLQQGPFMPGSPPCSLHDLAKSLPLPPPALGRSNR
Nucleotide Sequence ATGACCCTTCTCCACCGGGCAGGGCCAAGGACCCTGCAGCAAGGGCCCTTCATGCCGGGCTCACCACCCTGTTCCCTCCATGACCTCGCCAAAAGCCTCCCGCTCCCACCCCCGGCTTTGGGACGGTCAAACAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab