CircRNA Information

General Information
circRNA Basic Information
CircID chr16:29665206|29665366
Strand -
CircType exon
Host Gene ENSG00000197471.10;
Algorism CIRI2;
Sequence CACCATGCCCAGCTGCTTTTTTGTATTTTTGGTAGAGATGGGGTTTCACCATGTTGGCTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTACCTGCCTCAGCCTCCCAAAGTGCTGAGATTACAGACATGAGCCTCCGCGCCTTGCCTCCTCACCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:29665206|29665366 hsa-miR-216a-5p 0 0 1
chr16:29665206|29665366 hsa-miR-216a-3p 0 0 1
chr16:29665206|29665366 hsa-miR-612 0 0 1
chr16:29665206|29665366 hsa-miR-646 0 0 1
chr16:29665206|29665366 hsa-miR-650 1 1 1
chr16:29665206|29665366 hsa-miR-658 0 1 1
chr16:29665206|29665366 hsa-miR-216b-5p 0 0 1
chr16:29665206|29665366 hsa-miR-216b-3p 0 0 1
chr16:29665206|29665366 hsa-miR-940 0 0 1
chr16:29665206|29665366 hsa-miR-1262 0 0 1
chr16:29665206|29665366 hsa-miR-1827 0 1 1
chr16:29665206|29665366 hsa-miR-769-5p 0 0 1
chr16:29665206|29665366 hsa-miR-485-5p 0 0 1
chr16:29665206|29665366 hsa-miR-1207-3p 0 0 1
chr16:29665206|29665366 hsa-miR-654-3p 0 0 1
chr16:29665206|29665366 hsa-miR-524-3p 0 0 1
chr16:29665206|29665366 hsa-miR-525-3p 0 0 1
chr16:29665206|29665366 hsa-miR-1285 0 0 1
chr16:29665206|29665366 hsa-miR-1294 1 0 0
chr16:29665206|29665366 hsa-miR-1275 1 0 0
chr16:29665206|29665366 hsa-miR-544b 0 1 0
chr16:29665206|29665366 hsa-miR-3196 1 0 0
chr16:29665206|29665366 hsa-miR-3197 1 0 0
chr16:29665206|29665366 hsa-miR-3929 0 1 0
chr16:29665206|29665366 hsa-miR-4507 1 0 0
chr16:29665206|29665366 hsa-miR-3960 1 0 0
chr16:29665206|29665366 hsa-miR-4651 1 0 0
chr16:29665206|29665366 hsa-miR-4656 1 0 0
chr16:29665206|29665366 hsa-miR-4689 1 1 0
chr16:29665206|29665366 hsa-miR-4706 1 0 0
chr16:29665206|29665366 hsa-miR-4710 1 0 0
chr16:29665206|29665366 hsa-miR-5787 1 0 0
chr16:29665206|29665366 hsa-miR-6734-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6765-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6825-5p 1 0 0
chr16:29665206|29665366 hsa-miR-3622a-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6089 1 0 0
chr16:29665206|29665366 hsa-miR-3192-5p 1 1 0
chr16:29665206|29665366 hsa-miR-4695-5p 1 1 0
chr16:29665206|29665366 hsa-miR-4709-3p 1 0 0
chr16:29665206|29665366 hsa-miR-7160-5p 0 1 0
chr16:29665206|29665366 hsa-miR-6741-5p 1 0 0
chr16:29665206|29665366 hsa-miR-3189-5p 1 1 0
chr16:29665206|29665366 hsa-miR-6849-3p 0 1 0
chr16:29665206|29665366 hsa-miR-3180-3p 1 0 0
chr16:29665206|29665366 hsa-miR-6748-5p 0 1 0
chr16:29665206|29665366 hsa-miR-6805-5p 1 0 0
chr16:29665206|29665366 hsa-miR-2467-5p 0 1 0
chr16:29665206|29665366 hsa-miR-3150b-3p 1 0 0
chr16:29665206|29665366 hsa-miR-7855-5p 1 1 0
chr16:29665206|29665366 hsa-miR-6786-5p 1 0 0
chr16:29665206|29665366 hsa-miR-1229-5p 1 0 0
chr16:29665206|29665366 hsa-miR-1908-5p 1 0 0
chr16:29665206|29665366 hsa-miR-1228-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6771-5p 1 0 0
chr16:29665206|29665366 hsa-miR-149-3p 1 0 0
chr16:29665206|29665366 hsa-miR-6802-5p 1 0 0
chr16:29665206|29665366 hsa-miR-20b-3p 0 1 0
chr16:29665206|29665366 hsa-miR-6847-3p 0 1 0
chr16:29665206|29665366 hsa-miR-1207-5p 1 0 0
chr16:29665206|29665366 hsa-miR-1233-5p 1 0 0
chr16:29665206|29665366 hsa-miR-1273h-5p 0 1 0
chr16:29665206|29665366 hsa-miR-4763-3p 1 0 0
chr16:29665206|29665366 hsa-miR-6769b-5p 0 1 0
chr16:29665206|29665366 hsa-miR-6778-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6737-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6756-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6819-5p 1 0 0
chr16:29665206|29665366 hsa-miR-11181-3p 1 0 0
chr16:29665206|29665366 hsa-miR-6763-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6779-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6780a-5p 1 1 0
chr16:29665206|29665366 hsa-miR-6797-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6808-5p 1 1 0
chr16:29665206|29665366 hsa-miR-7111-5p 1 0 0
chr16:29665206|29665366 hsa-miR-4728-5p 1 0 0
chr16:29665206|29665366 hsa-miR-1237-5p 1 0 0
chr16:29665206|29665366 hsa-miR-328-5p 1 0 0
chr16:29665206|29665366 hsa-miR-4649-5p 1 0 0
chr16:29665206|29665366 hsa-miR-4701-3p 1 1 0
chr16:29665206|29665366 hsa-miR-4745-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6729-5p 1 0 0
chr16:29665206|29665366 hsa-miR-675-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6846-5p 0 1 0
chr16:29665206|29665366 hsa-miR-6858-5p 1 1 0
chr16:29665206|29665366 hsa-miR-6831-5p 0 1 0
chr16:29665206|29665366 hsa-miR-939-5p 1 0 0
chr16:29665206|29665366 hsa-miR-4758-5p 1 0 0
chr16:29665206|29665366 hsa-miR-3940-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6736-5p 1 1 0
chr16:29665206|29665366 hsa-miR-6766-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6785-5p 1 0 0
chr16:29665206|29665366 hsa-miR-4756-5p 1 0 0
chr16:29665206|29665366 hsa-miR-6884-5p 0 1 0
chr16:29665206|29665366 hsa-miR-3622b-3p 0 1 0
chr16:29665206|29665366 hsa-miR-6771-3p 0 1 0
chr16:29665206|29665366 hsa-miR-3927-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:29665206|29665366
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MLFCIFGRDGVSPCWLGWSQTPDLR
Nucleotide Sequence CTGCTTTTTTGTATTTTTGGTAGAGATGGGGTTTCACCATGTTGGCTAGGCTGGTCTCAAACTCCTGACCTCAGGTGA
CircID chr16:29665206|29665366
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MTSGDLPASASQSAEITDMSLRALPPHP
Nucleotide Sequence CTGACCTCAGGTGATCTACCTGCCTCAGCCTCCCAAAGTGCTGAGATTACAGACATGAGCCTCCGCGCCTTGCCTCCTCACCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab