CircRNA Information

General Information
circRNA Basic Information
CircID chr16:2973072|2973243
Strand +
CircType exon
Host Gene ENSG00000127564.15;
Algorism CIRI2;
Sequence CCTCCTTGTCTCGCCTGCCCTCCTGCAGGCCTTCACTCTCCCCTGAGGCTGTCCTGGCCCGGACTGTGGGGAGCACCTCCACCCCCCGGAGCAGGTGCACACCCAGGTAAGCAGGTCCAGGGGCTGGGGTGGGCAGGGCTAGCTTTTGGATCCTGAGTGTCACTACTCTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:2973072|2973243 hsa-miR-492 0 0 1
chr16:2973072|2973243 hsa-miR-510-5p 0 0 1
chr16:2973072|2973243 hsa-miR-510-3p 0 0 1
chr16:2973072|2973243 hsa-miR-608 1 0 1
chr16:2973072|2973243 hsa-miR-609 0 0 1
chr16:2973072|2973243 hsa-miR-619-5p 0 0 1
chr16:2973072|2973243 hsa-miR-619-3p 0 0 1
chr16:2973072|2973243 hsa-miR-1205 0 0 1
chr16:2973072|2973243 hsa-miR-1286 0 0 1
chr16:2973072|2973243 hsa-miR-1266-5p 0 0 1
chr16:2973072|2973243 hsa-miR-1266-3p 0 0 1
chr16:2973072|2973243 hsa-miR-331-3p 0 1 1
chr16:2973072|2973243 hsa-miR-129-3p 0 0 1
chr16:2973072|2973243 hsa-miR-1183 1 0 0
chr16:2973072|2973243 hsa-miR-2861 1 0 0
chr16:2973072|2973243 hsa-miR-4308 0 1 0
chr16:2973072|2973243 hsa-miR-3907 0 1 0
chr16:2973072|2973243 hsa-miR-4436a 0 1 0
chr16:2973072|2973243 hsa-miR-4518 0 1 0
chr16:2973072|2973243 hsa-miR-4651 1 1 0
chr16:2973072|2973243 hsa-miR-4721 1 0 0
chr16:2973072|2973243 hsa-miR-4739 1 0 0
chr16:2973072|2973243 hsa-miR-5192 0 1 0
chr16:2973072|2973243 hsa-miR-6126 0 1 0
chr16:2973072|2973243 hsa-miR-6165 1 0 0
chr16:2973072|2973243 hsa-miR-8085 1 1 0
chr16:2973072|2973243 hsa-miR-370-3p 1 0 0
chr16:2973072|2973243 hsa-miR-6734-5p 1 0 0
chr16:2973072|2973243 hsa-miR-504-3p 1 0 0
chr16:2973072|2973243 hsa-miR-6747-3p 0 1 0
chr16:2973072|2973243 hsa-miR-4433a-3p 1 0 0
chr16:2973072|2973243 hsa-miR-6836-3p 1 0 0
chr16:2973072|2973243 hsa-miR-6720-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6089 1 0 0
chr16:2973072|2973243 hsa-miR-7847-3p 1 0 0
chr16:2973072|2973243 hsa-miR-4695-5p 1 0 0
chr16:2973072|2973243 hsa-miR-4722-5p 1 1 0
chr16:2973072|2973243 hsa-miR-6727-5p 1 0 0
chr16:2973072|2973243 hsa-miR-197-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6798-5p 1 1 0
chr16:2973072|2973243 hsa-miR-6782-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6858-3p 1 1 0
chr16:2973072|2973243 hsa-miR-7109-5p 1 0 0
chr16:2973072|2973243 hsa-miR-1226-5p 1 1 0
chr16:2973072|2973243 hsa-miR-4763-5p 1 0 0
chr16:2973072|2973243 hsa-miR-4707-3p 1 1 0
chr16:2973072|2973243 hsa-miR-4640-5p 1 1 0
chr16:2973072|2973243 hsa-miR-6753-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6771-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6749-5p 1 0 0
chr16:2973072|2973243 hsa-miR-3690 0 1 0
chr16:2973072|2973243 hsa-miR-6824-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6742-3p 0 1 0
chr16:2973072|2973243 hsa-miR-6769a-3p 0 1 0
chr16:2973072|2973243 hsa-miR-6869-5p 1 1 0
chr16:2973072|2973243 hsa-miR-423-5p 1 0 0
chr16:2973072|2973243 hsa-miR-4661-3p 1 1 0
chr16:2973072|2973243 hsa-miR-6804-3p 1 0 0
chr16:2973072|2973243 hsa-miR-6720-3p 1 0 0
chr16:2973072|2973243 hsa-miR-6752-3p 0 1 0
chr16:2973072|2973243 hsa-miR-3664-3p 0 1 0
chr16:2973072|2973243 hsa-miR-3173-5p 0 1 0
chr16:2973072|2973243 hsa-miR-6779-3p 0 1 0
chr16:2973072|2973243 hsa-miR-1207-5p 1 0 0
chr16:2973072|2973243 hsa-miR-4763-3p 1 0 0
chr16:2973072|2973243 hsa-miR-1343-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6743-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6752-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6754-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6803-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6851-5p 0 1 0
chr16:2973072|2973243 hsa-miR-1249-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6722-3p 1 0 0
chr16:2973072|2973243 hsa-miR-6797-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6879-5p 0 1 0
chr16:2973072|2973243 hsa-miR-7111-5p 1 0 0
chr16:2973072|2973243 hsa-miR-4728-5p 1 1 0
chr16:2973072|2973243 hsa-miR-328-5p 1 1 0
chr16:2973072|2973243 hsa-miR-4632-5p 1 1 0
chr16:2973072|2973243 hsa-miR-4685-5p 1 0 0
chr16:2973072|2973243 hsa-miR-4726-5p 1 1 0
chr16:2973072|2973243 hsa-miR-4749-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6729-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6735-5p 0 1 0
chr16:2973072|2973243 hsa-miR-4436b-3p 0 1 0
chr16:2973072|2973243 hsa-miR-6885-5p 1 0 0
chr16:2973072|2973243 hsa-miR-939-5p 1 0 0
chr16:2973072|2973243 hsa-miR-3199 1 0 0
chr16:2973072|2973243 hsa-miR-6731-5p 0 1 0
chr16:2973072|2973243 hsa-miR-6891-5p 1 0 0
chr16:2973072|2973243 hsa-miR-6785-5p 1 0 0
chr16:2973072|2973243 hsa-miR-3689d 0 1 0
chr16:2973072|2973243 hsa-miR-6862-3p 0 1 0
chr16:2973072|2973243 hsa-miR-6805-3p 1 0 0
chr16:2973072|2973243 hsa-miR-6775-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:2973072|2973243
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MRLSWPGLWGAPPPPGAGAHPGKQVQGLGWAGLAFGS
Nucleotide Sequence CTGAGGCTGTCCTGGCCCGGACTGTGGGGAGCACCTCCACCCCCCGGAGCAGGTGCACACCCAGGTAAGCAGGTCCAGGGGCTGGGGTGGGCAGGGCTAGCTTTTGGATCCTGA
CircID chr16:2973072|2973243
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MSRLPSCRPSLSPEAVLARTVGSTSTPRSRCTPR
Nucleotide Sequence TTGTCTCGCCTGCCCTCCTGCAGGCCTTCACTCTCCCCTGAGGCTGTCCTGGCCCGGACTGTGGGGAGCACCTCCACCCCCCGGAGCAGGTGCACACCCAGGTAA
CircID chr16:2973072|2973243
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MPTPAPGPAYLGVHLLRGVEVLPTVRARTASGESEGLQEGRRDKE
Nucleotide Sequence CTGCCCACCCCAGCCCCTGGACCTGCTTACCTGGGTGTGCACCTGCTCCGGGGGGTGGAGGTGCTCCCCACAGTCCGGGCCAGGACAGCCTCAGGGGAGAGTGAAGGCCTGCAGGAGGGCAGGCGAGACAAGGAG
CircID chr16:2973072|2973243
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MDLLTWVCTCSGGWRCSPQSGPGQPQGRVKACRRAGETRR
Nucleotide Sequence CTGGACCTGCTTACCTGGGTGTGCACCTGCTCCGGGGGGTGGAGGTGCTCCCCACAGTCCGGGCCAGGACAGCCTCAGGGGAGAGTGAAGGCCTGCAGGAGGGCAGGCGAGACAAGGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab