CircRNA Information

General Information
circRNA Basic Information
CircID chr16:2976840|2976970
Strand +
CircType exon
Host Gene ENSG00000127564.15;
Algorism CIRI2;
Sequence CCCCATCCCAGTCCCAGCCTACTTCCGCCACGCAGAACCTGGATTCTCCCTCAAGAGGCCCAGGGGGCTCAGCCGGAGCCTCCCACCTCCGCCCCCTGCCAAGGGCAGCATTCCCATCAGCCGCCTCTTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:2976840|2976970 hsa-miR-526b-5p 0 0 1
chr16:2976840|2976970 hsa-miR-526b-3p 0 0 1
chr16:2976840|2976970 hsa-miR-658 1 0 1
chr16:2976840|2976970 hsa-miR-938 0 0 1
chr16:2976840|2976970 hsa-miR-1225-3p 0 0 1
chr16:2976840|2976970 hsa-miR-331-3p 0 0 1
chr16:2976840|2976970 hsa-miR-1207-5p 1 0 1
chr16:2976840|2976970 hsa-miR-1233 0 0 1
chr16:2976840|2976970 hsa-miR-608 1 0 0
chr16:2976840|2976970 hsa-miR-612 1 0 0
chr16:2976840|2976970 hsa-miR-645 1 0 0
chr16:2976840|2976970 hsa-miR-663a 1 0 0
chr16:2976840|2976970 hsa-miR-1268a 1 0 0
chr16:2976840|2976970 hsa-miR-1275 1 0 0
chr16:2976840|2976970 hsa-miR-3155a 1 0 0
chr16:2976840|2976970 hsa-miR-3185 1 0 0
chr16:2976840|2976970 hsa-miR-3196 1 0 0
chr16:2976840|2976970 hsa-miR-4322 1 0 0
chr16:2976840|2976970 hsa-miR-4265 1 0 0
chr16:2976840|2976970 hsa-miR-3937 1 0 0
chr16:2976840|2976970 hsa-miR-1268b 1 0 0
chr16:2976840|2976970 hsa-miR-4430 1 0 0
chr16:2976840|2976970 hsa-miR-4467 1 0 0
chr16:2976840|2976970 hsa-miR-3155b 1 0 0
chr16:2976840|2976970 hsa-miR-4488 1 0 0
chr16:2976840|2976970 hsa-miR-4510 1 0 0
chr16:2976840|2976970 hsa-miR-4533 1 0 0
chr16:2976840|2976970 hsa-miR-3960 1 0 0
chr16:2976840|2976970 hsa-miR-4651 1 0 0
chr16:2976840|2976970 hsa-miR-4656 1 0 0
chr16:2976840|2976970 hsa-miR-4739 1 0 0
chr16:2976840|2976970 hsa-miR-5787 1 0 0
chr16:2976840|2976970 hsa-miR-6127 1 0 0
chr16:2976840|2976970 hsa-miR-6133 1 0 0
chr16:2976840|2976970 hsa-miR-6745 1 0 0
chr16:2976840|2976970 hsa-miR-7150 1 0 0
chr16:2976840|2976970 hsa-miR-8085 1 0 0
chr16:2976840|2976970 hsa-miR-12114 1 0 0
chr16:2976840|2976970 hsa-miR-6734-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6765-5p 1 0 0
chr16:2976840|2976970 hsa-miR-3150a-3p 1 0 0
chr16:2976840|2976970 hsa-miR-7106-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6894-5p 1 0 0
chr16:2976840|2976970 hsa-miR-4687-3p 1 0 0
chr16:2976840|2976970 hsa-miR-25-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6833-5p 1 0 0
chr16:2976840|2976970 hsa-miR-7847-3p 1 0 0
chr16:2976840|2976970 hsa-miR-6746-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6806-5p 1 0 0
chr16:2976840|2976970 hsa-miR-7108-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6742-5p 1 0 0
chr16:2976840|2976970 hsa-miR-3180-3p 1 0 0
chr16:2976840|2976970 hsa-miR-6772-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6732-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6805-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6798-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6760-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6782-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6821-5p 1 0 0
chr16:2976840|2976970 hsa-miR-5006-5p 1 0 0
chr16:2976840|2976970 hsa-miR-7109-5p 1 0 0
chr16:2976840|2976970 hsa-miR-1226-5p 1 0 0
chr16:2976840|2976970 hsa-miR-1229-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6834-5p 1 0 0
chr16:2976840|2976970 hsa-miR-4787-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6824-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6789-5p 1 0 0
chr16:2976840|2976970 hsa-miR-7844-5p 1 0 0
chr16:2976840|2976970 hsa-miR-10400-5p 1 0 0
chr16:2976840|2976970 hsa-miR-4763-3p 1 0 0
chr16:2976840|2976970 hsa-miR-6787-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6816-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6870-5p 1 0 0
chr16:2976840|2976970 hsa-miR-1343-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6737-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6752-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6803-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6819-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6851-5p 1 0 0
chr16:2976840|2976970 hsa-miR-11181-3p 1 0 0
chr16:2976840|2976970 hsa-miR-1249-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6722-3p 1 0 0
chr16:2976840|2976970 hsa-miR-6751-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6788-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6808-5p 1 0 0
chr16:2976840|2976970 hsa-miR-7111-5p 1 0 0
chr16:2976840|2976970 hsa-miR-10396b-5p 1 0 0
chr16:2976840|2976970 hsa-miR-1237-5p 1 0 0
chr16:2976840|2976970 hsa-miR-328-5p 1 0 0
chr16:2976840|2976970 hsa-miR-4649-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6729-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6794-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6846-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6848-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6858-5p 1 0 0
chr16:2976840|2976970 hsa-miR-4758-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6731-5p 1 0 0
chr16:2976840|2976970 hsa-miR-4665-5p 1 0 0
chr16:2976840|2976970 hsa-miR-6724-5p 1 0 0
chr16:2976840|2976970 hsa-miR-3529-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:2976840|2976970
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MDSPSRGPGGSAGASHLRPLPRAAFPSAASS
Nucleotide Sequence CTGGATTCTCCCTCAAGAGGCCCAGGGGGCTCAGCCGGAGCCTCCCACCTCCGCCCCCTGCCAAGGGCAGCATTCCCATCAGCCGCCTCTTCC
CircID chr16:2976840|2976970
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MMGMLPLAGGGGGRLRLSPLGLLRENPGSAWRK
Nucleotide Sequence CTGATGGGAATGCTGCCCTTGGCAGGGGGCGGAGGTGGGAGGCTCCGGCTGAGCCCCCTGGGCCTCTTGAGGGAGAATCCAGGTTCTGCGTGGCGGAAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab