CircRNA Information

General Information
circRNA Basic Information
CircID chr16:29810351|29810587
Strand +
CircType exon
Host Gene ENSG00000103495.12;
Algorism CIRI2;
Sequence CGTCGAGGGAAGAGGCTCACAAGTCCCTGGGAAGACAGGGCATGGGCTTACAGAGAGGAGAGGGGGTACGGGCAGTGGCTGCTCGTGTCCTCTGCCACCCCTGCCCACTGTCCAGGGGACTTCAACACAACCGAGGGGACAGGTTTGTGTGGGGTCAGGTCTGACAGAAGAGGAGCAGGAGAAACAAATCGTTAAAACCTAGCGAATTCCCCTAAGAAAACATTTCTTCCTCCTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:29810351|29810587 hsa-miR-370-5p 0 0 1
chr16:29810351|29810587 hsa-miR-370-3p 0 0 1
chr16:29810351|29810587 hsa-miR-573 0 0 1
chr16:29810351|29810587 hsa-miR-608 0 1 1
chr16:29810351|29810587 hsa-miR-649 0 0 1
chr16:29810351|29810587 hsa-miR-653-5p 0 0 1
chr16:29810351|29810587 hsa-miR-653-3p 0 0 1
chr16:29810351|29810587 hsa-miR-874-5p 0 0 1
chr16:29810351|29810587 hsa-miR-874-3p 0 0 1
chr16:29810351|29810587 hsa-miR-1236-5p 0 0 1
chr16:29810351|29810587 hsa-miR-1236-3p 0 0 1
chr16:29810351|29810587 hsa-miR-1197 0 0 1
chr16:29810351|29810587 hsa-miR-146b-3p 0 0 1
chr16:29810351|29810587 hsa-miR-339-5p 0 1 1
chr16:29810351|29810587 hsa-miR-331-3p 0 0 1
chr16:29810351|29810587 hsa-miR-1207-5p 0 1 1
chr16:29810351|29810587 hsa-miR-642 0 0 1
chr16:29810351|29810587 hsa-miR-602 0 1 0
chr16:29810351|29810587 hsa-miR-1976 0 1 0
chr16:29810351|29810587 hsa-miR-3138 0 1 0
chr16:29810351|29810587 hsa-miR-3183 0 1 0
chr16:29810351|29810587 hsa-miR-4268 0 1 0
chr16:29810351|29810587 hsa-miR-3916 0 1 0
chr16:29810351|29810587 hsa-miR-4641 0 1 0
chr16:29810351|29810587 hsa-miR-4651 0 1 0
chr16:29810351|29810587 hsa-miR-6860 0 1 0
chr16:29810351|29810587 hsa-miR-6881-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6510-5p 0 1 0
chr16:29810351|29810587 hsa-miR-6721-5p 0 1 0
chr16:29810351|29810587 hsa-miR-6817-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6845-3p 0 1 0
chr16:29810351|29810587 hsa-miR-877-3p 0 1 0
chr16:29810351|29810587 hsa-miR-2467-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6782-5p 0 1 0
chr16:29810351|29810587 hsa-miR-6772-3p 0 1 0
chr16:29810351|29810587 hsa-miR-1229-5p 0 1 0
chr16:29810351|29810587 hsa-miR-4691-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6514-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6847-5p 0 1 0
chr16:29810351|29810587 hsa-miR-4743-3p 0 1 0
chr16:29810351|29810587 hsa-miR-4787-5p 0 1 0
chr16:29810351|29810587 hsa-miR-6824-5p 0 1 0
chr16:29810351|29810587 hsa-miR-4640-3p 0 1 0
chr16:29810351|29810587 hsa-miR-4727-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6872-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6826-3p 0 1 0
chr16:29810351|29810587 hsa-miR-5004-5p 0 1 0
chr16:29810351|29810587 hsa-miR-6798-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6847-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6890-3p 0 1 0
chr16:29810351|29810587 hsa-miR-4763-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6865-5p 0 1 0
chr16:29810351|29810587 hsa-miR-6722-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6763-5p 1 0 0
chr16:29810351|29810587 hsa-miR-6738-5p 0 1 0
chr16:29810351|29810587 hsa-miR-3187-5p 0 1 0
chr16:29810351|29810587 hsa-miR-365a-5p 0 1 0
chr16:29810351|29810587 hsa-miR-6877-3p 0 1 0
chr16:29810351|29810587 hsa-miR-324-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6891-5p 0 1 0
chr16:29810351|29810587 hsa-miR-6791-5p 0 1 0
chr16:29810351|29810587 hsa-miR-4723-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6751-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6769b-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6819-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6823-3p 0 1 0
chr16:29810351|29810587 hsa-miR-4768-5p 0 1 0
chr16:29810351|29810587 hsa-miR-6781-3p 0 1 0
chr16:29810351|29810587 hsa-miR-6764-5p 0 1 0
chr16:29810351|29810587 hsa-miR-5699-3p 0 1 0
chr16:29810351|29810587 hsa-miR-873-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:29810351|29810587
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MLVSSATPAHCPGDFNTTEGTGLCGVRSDRRGAGETNR
Nucleotide Sequence CTGCTCGTGTCCTCTGCCACCCCTGCCCACTGTCCAGGGGACTTCAACACAACCGAGGGGACAGGTTTGTGTGGGGTCAGGTCTGACAGAAGAGGAGCAGGAGAAACAAATCGTTAA
CircID chr16:29810351|29810587
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MPPLPTVQGTSTQPRGQVCVGSGLTEEEQEKQIVKT
Nucleotide Sequence CTGCCACCCCTGCCCACTGTCCAGGGGACTTCAACACAACCGAGGGGACAGGTTTGTGTGGGGTCAGGTCTGACAGAAGAGGAGCAGGAGAAACAAATCGTTAAAACCTAG
CircID chr16:29810351|29810587
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MGRQGMGLQRGEGVRAVAARVLCHPCPLSRGLQHNRGDRFVWGQV
Nucleotide Sequence CTGGGAAGACAGGGCATGGGCTTACAGAGAGGAGAGGGGGTACGGGCAGTGGCTGCTCGTGTCCTCTGCCACCCCTGCCCACTGTCCAGGGGACTTCAACACAACCGAGGGGACAGGTTTGTGTGGGGTCAGGTCTGA
CircID chr16:29810351|29810587
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MPVPPLLSVSPCPVFPGTCEPLPST
Nucleotide Sequence CTGCCCGTACCCCCTCTCCTCTCTGTAAGCCCATGCCCTGTCTTCCCAGGGACTTGTGAGCCTCTTCCCTCGACG
CircID chr16:29810351|29810587
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence MSDLTPHKPVPSVVLKSPGQWAGVAEDTSSHCPYPLSSL
Nucleotide Sequence CTGTCAGACCTGACCCCACACAAACCTGTCCCCTCGGTTGTGTTGAAGTCCCCTGGACAGTGGGCAGGGGTGGCAGAGGACACGAGCAGCCACTGCCCGTACCCCCTCTCCTCTCTGTAA
CircID chr16:29810351|29810587
ORF Type ORF6
Protein Length 32
Nucleotide Length 99
Protein Sequence MDSGQGWQRTRAATARTPSPLCKPMPCLPRDL
Nucleotide Sequence CTGGACAGTGGGCAGGGGTGGCAGAGGACACGAGCAGCCACTGCCCGTACCCCCTCTCCTCTCTGTAAGCCCATGCCCTGTCTTCCCAGGGACTTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab