CircRNA Information

General Information
circRNA Basic Information
CircID chr16:29810430|29810573
Strand -
CircType exon
Host Gene ENSG00000103495.12;
Algorism CIRI2;
Sequence CTGACCCCACACAAACCTGTCCCCTCGGTTGTGTTGAAGTCCCCTGGACAGTGGGCAGGGGTGGCAGAGGACACGAGCAGCCACTGCCCGTACCCCCTCTCCTCTCTGTAAGCCCATGCCCTGTCTTCCCAGGGACTTGTGAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:29810430|29810573 hsa-miR-198 0 0 1
chr16:29810430|29810573 hsa-miR-34a-5p 0 0 1
chr16:29810430|29810573 hsa-miR-34a-3p 0 0 1
chr16:29810430|29810573 hsa-miR-187-5p 0 0 1
chr16:29810430|29810573 hsa-miR-187-3p 0 0 1
chr16:29810430|29810573 hsa-miR-449a 0 0 1
chr16:29810430|29810573 hsa-miR-599 0 0 1
chr16:29810430|29810573 hsa-miR-600 0 0 1
chr16:29810430|29810573 hsa-miR-604 0 0 1
chr16:29810430|29810573 hsa-miR-647 0 0 1
chr16:29810430|29810573 hsa-miR-449b-5p 0 0 1
chr16:29810430|29810573 hsa-miR-449b-3p 0 0 1
chr16:29810430|29810573 hsa-miR-421 0 0 1
chr16:29810430|29810573 hsa-miR-513b-5p 0 0 1
chr16:29810430|29810573 hsa-miR-513b-3p 0 0 1
chr16:29810430|29810573 hsa-miR-491-5p 0 0 1
chr16:29810430|29810573 hsa-miR-615-5p 0 0 1
chr16:29810430|29810573 hsa-miR-34c-5p 0 0 1
chr16:29810430|29810573 hsa-miR-7 0 0 1
chr16:29810430|29810573 hsa-miR-644 0 0 1
chr16:29810430|29810573 hsa-miR-147 0 0 1
chr16:29810430|29810573 hsa-miR-612 1 0 0
chr16:29810430|29810573 hsa-miR-4466 1 0 0
chr16:29810430|29810573 hsa-miR-4488 1 0 0
chr16:29810430|29810573 hsa-miR-4651 1 0 0
chr16:29810430|29810573 hsa-miR-4706 1 0 0
chr16:29810430|29810573 hsa-miR-4710 1 0 0
chr16:29810430|29810573 hsa-miR-4739 0 1 0
chr16:29810430|29810573 hsa-miR-5090 1 0 0
chr16:29810430|29810573 hsa-miR-6860 1 0 0
chr16:29810430|29810573 hsa-miR-8089 1 1 0
chr16:29810430|29810573 hsa-miR-12119 1 0 0
chr16:29810430|29810573 hsa-miR-4433b-3p 1 0 0
chr16:29810430|29810573 hsa-miR-210-5p 0 1 0
chr16:29810430|29810573 hsa-miR-27a-5p 1 0 0
chr16:29810430|29810573 hsa-miR-7154-3p 0 1 0
chr16:29810430|29810573 hsa-miR-6890-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6762-3p 0 1 0
chr16:29810430|29810573 hsa-miR-6721-5p 1 0 0
chr16:29810430|29810573 hsa-miR-1915-5p 0 1 0
chr16:29810430|29810573 hsa-miR-1292-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6732-5p 1 1 0
chr16:29810430|29810573 hsa-miR-6805-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6782-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6774-3p 0 1 0
chr16:29810430|29810573 hsa-miR-6835-5p 1 1 0
chr16:29810430|29810573 hsa-miR-1226-5p 1 0 0
chr16:29810430|29810573 hsa-miR-204-3p 0 1 0
chr16:29810430|29810573 hsa-miR-4715-3p 0 1 0
chr16:29810430|29810573 hsa-miR-92b-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6780a-3p 0 1 0
chr16:29810430|29810573 hsa-miR-149-3p 1 0 0
chr16:29810430|29810573 hsa-miR-7112-5p 0 1 0
chr16:29810430|29810573 hsa-miR-1225-5p 1 0 0
chr16:29810430|29810573 hsa-miR-4776-3p 0 1 0
chr16:29810430|29810573 hsa-miR-4652-5p 0 1 0
chr16:29810430|29810573 hsa-miR-6773-3p 0 1 0
chr16:29810430|29810573 hsa-miR-2277-5p 1 0 0
chr16:29810430|29810573 hsa-miR-4727-5p 0 1 0
chr16:29810430|29810573 hsa-miR-1207-5p 1 0 0
chr16:29810430|29810573 hsa-miR-4763-3p 1 0 0
chr16:29810430|29810573 hsa-miR-6787-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6816-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6775-5p 1 1 0
chr16:29810430|29810573 hsa-miR-1343-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6752-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6756-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6842-5p 1 0 0
chr16:29810430|29810573 hsa-miR-7110-5p 1 0 0
chr16:29810430|29810573 hsa-miR-1249-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6779-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6852-3p 0 1 0
chr16:29810430|29810573 hsa-miR-4728-5p 1 0 0
chr16:29810430|29810573 hsa-miR-5196-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6862-5p 0 1 0
chr16:29810430|29810573 hsa-miR-328-5p 1 0 0
chr16:29810430|29810573 hsa-miR-4685-5p 1 0 0
chr16:29810430|29810573 hsa-miR-4745-5p 1 0 0
chr16:29810430|29810573 hsa-miR-675-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6794-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6795-5p 1 1 0
chr16:29810430|29810573 hsa-miR-6846-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6883-5p 1 0 0
chr16:29810430|29810573 hsa-miR-365a-5p 1 0 0
chr16:29810430|29810573 hsa-miR-6758-5p 0 1 0
chr16:29810430|29810573 hsa-miR-6856-5p 1 1 0
chr16:29810430|29810573 hsa-miR-4664-5p 1 0 0
chr16:29810430|29810573 hsa-miR-4646-5p 0 1 0
chr16:29810430|29810573 hsa-miR-4747-5p 0 1 0
chr16:29810430|29810573 hsa-miR-6791-5p 0 1 0
chr16:29810430|29810573 hsa-miR-6801-3p 0 1 0
chr16:29810430|29810573 hsa-miR-6810-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:29810430|29810573
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence LTPHKPVPSVVLKSPGQWAGVAEDTSSHCPYPLSSL
Nucleotide Sequence CTGACCCCACACAAACCTGTCCCCTCGGTTGTGTTGAAGTCCCCTGGACAGTGGGCAGGGGTGGCAGAGGACACGAGCAGCCACTGCCCGTACCCCCTCTCCTCTCTGTAA
CircID chr16:29810430|29810573
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MDSGQGWQRTRAATARTPSPLCKPMPCLPRDL
Nucleotide Sequence CTGGACAGTGGGCAGGGGTGGCAGAGGACACGAGCAGCCACTGCCCGTACCCCCTCTCCTCTCTGTAAGCCCATGCCCTGTCTTCCCAGGGACTTGTGA
CircID chr16:29810430|29810573
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MGRQGMGLQRGEGVRAVAARVLCHPCPLSRGLQHNRGDRFVWGQ
Nucleotide Sequence CTGGGAAGACAGGGCATGGGCTTACAGAGAGGAGAGGGGGTACGGGCAGTGGCTGCTCGTGTCCTCTGCCACCCCTGCCCACTGTCCAGGGGACTTCAACACAACCGAGGGGACAGGTTTGTGTGGGGTCAG
CircID chr16:29810430|29810573
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MLVSSATPAHCPGDFNTTEGTGLCGV
Nucleotide Sequence CTGCTCGTGTCCTCTGCCACCCCTGCCCACTGTCCAGGGGACTTCAACACAACCGAGGGGACAGGTTTGTGTGGGGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab