CircRNA Information

General Information
circRNA Basic Information
CircID chr16:29830610|29830964
Strand -
CircType exon
Host Gene ENSG00000281348.1;
Algorism CIRI2;
Sequence CAGAACAGCAACGTGTCCCGTGTGGAGGTCGGGCCAAAGACCTACATCCGGCAGGACAATGAGAGGTGGGTGTGGGGGCTGGGCTGTGGGGGATCCTTGGGGATGTGGGGGCCTGTTTGGCTGGCATGATGGTCCTTATCCTCCTCCCTCTTCCCAAGCAGGAGTGGCCCTCGCTTGGGCGATAGAGAGGTTTCTCTCTCATTTGGTGTCCTCTTTGGTAGTGGAGACCTGGTCCCAGGTCCTCACACCTCTTCTCATCTTCCTGCAGGGTACTGTTTGCCCCCATGCGCATGGTGACCGTCCCCCCACGTCACTACTGCACAGTGGCCAACCCTGTGTCTCGGGATGCCCAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:29830610|29830964 hsa-miR-10a-5p 0 0 1
chr16:29830610|29830964 hsa-miR-10a-3p 0 0 1
chr16:29830610|29830964 hsa-miR-10b-5p 0 0 1
chr16:29830610|29830964 hsa-miR-10b-3p 0 0 1
chr16:29830610|29830964 hsa-miR-370-5p 0 0 1
chr16:29830610|29830964 hsa-miR-370-3p 0 0 1
chr16:29830610|29830964 hsa-miR-328-5p 0 0 1
chr16:29830610|29830964 hsa-miR-328-3p 0 0 1
chr16:29830610|29830964 hsa-miR-492 0 1 1
chr16:29830610|29830964 hsa-miR-583 0 0 1
chr16:29830610|29830964 hsa-miR-588 0 1 1
chr16:29830610|29830964 hsa-miR-602 0 1 1
chr16:29830610|29830964 hsa-miR-612 0 0 1
chr16:29830610|29830964 hsa-miR-631 0 1 1
chr16:29830610|29830964 hsa-miR-765 0 1 1
chr16:29830610|29830964 hsa-miR-1202 0 1 1
chr16:29830610|29830964 hsa-miR-1205 0 0 1
chr16:29830610|29830964 hsa-miR-1286 0 0 1
chr16:29830610|29830964 hsa-miR-1294 0 0 1
chr16:29830610|29830964 hsa-miR-1253 0 0 1
chr16:29830610|29830964 hsa-miR-1321 0 0 1
chr16:29830610|29830964 hsa-miR-1197 0 0 1
chr16:29830610|29830964 hsa-miR-1224-5p 0 1 1
chr16:29830610|29830964 hsa-miR-296-3p 0 0 1
chr16:29830610|29830964 hsa-miR-324-5p 0 1 1
chr16:29830610|29830964 hsa-miR-361-3p 0 0 1
chr16:29830610|29830964 hsa-miR-1224-3p 0 1 1
chr16:29830610|29830964 hsa-miR-199b-3p 0 0 1
chr16:29830610|29830964 hsa-miR-199a-3p 0 0 1
chr16:29830610|29830964 hsa-miR-483-3p 0 0 1
chr16:29830610|29830964 hsa-miR-220c 0 0 1
chr16:29830610|29830964 hsa-miR-9 0 0 1
chr16:29830610|29830964 hsa-miR-1300 0 0 1
chr16:29830610|29830964 hsa-miR-1285 0 0 1
chr16:29830610|29830964 hsa-miR-1185 0 0 1
chr16:29830610|29830964 hsa-miR-101 0 0 1
chr16:29830610|29830964 hsa-miR-484 1 0 0
chr16:29830610|29830964 hsa-miR-637 1 0 0
chr16:29830610|29830964 hsa-miR-1183 1 0 0
chr16:29830610|29830964 hsa-miR-663b 1 0 0
chr16:29830610|29830964 hsa-miR-1538 1 0 0
chr16:29830610|29830964 hsa-miR-3125 1 0 0
chr16:29830610|29830964 hsa-miR-3154 0 1 0
chr16:29830610|29830964 hsa-miR-4313 1 0 0
chr16:29830610|29830964 hsa-miR-4252 0 1 0
chr16:29830610|29830964 hsa-miR-3661 0 1 0
chr16:29830610|29830964 hsa-miR-3943 0 1 0
chr16:29830610|29830964 hsa-miR-1268b 1 0 0
chr16:29830610|29830964 hsa-miR-4510 0 1 0
chr16:29830610|29830964 hsa-miR-4721 1 0 0
chr16:29830610|29830964 hsa-miR-4739 1 1 0
chr16:29830610|29830964 hsa-miR-5685 0 1 0
chr16:29830610|29830964 hsa-miR-6077 0 1 0
chr16:29830610|29830964 hsa-miR-6127 0 1 0
chr16:29830610|29830964 hsa-miR-6129 0 1 0
chr16:29830610|29830964 hsa-miR-6133 1 1 0
chr16:29830610|29830964 hsa-miR-8085 0 1 0
chr16:29830610|29830964 hsa-miR-7106-5p 0 1 0
chr16:29830610|29830964 hsa-miR-6894-5p 1 1 0
chr16:29830610|29830964 hsa-miR-7851-3p 0 1 0
chr16:29830610|29830964 hsa-miR-4722-5p 1 0 0
chr16:29830610|29830964 hsa-miR-7154-3p 1 0 0
chr16:29830610|29830964 hsa-miR-874-5p 1 0 0
chr16:29830610|29830964 hsa-miR-770-5p 1 0 0
chr16:29830610|29830964 hsa-miR-6849-3p 1 1 0
chr16:29830610|29830964 hsa-miR-3194-5p 0 1 0
chr16:29830610|29830964 hsa-miR-6810-5p 0 1 0
chr16:29830610|29830964 hsa-miR-4713-5p 1 1 0
chr16:29830610|29830964 hsa-miR-532-3p 1 1 0
chr16:29830610|29830964 hsa-miR-7109-5p 1 1 0
chr16:29830610|29830964 hsa-miR-1226-5p 1 1 0
chr16:29830610|29830964 hsa-miR-6740-5p 0 1 0
chr16:29830610|29830964 hsa-miR-4793-5p 0 1 0
chr16:29830610|29830964 hsa-miR-6823-5p 0 1 0
chr16:29830610|29830964 hsa-miR-92b-5p 0 1 0
chr16:29830610|29830964 hsa-miR-6847-5p 1 0 0
chr16:29830610|29830964 hsa-miR-4707-5p 1 0 0
chr16:29830610|29830964 hsa-miR-3619-3p 1 1 0
chr16:29830610|29830964 hsa-miR-4661-3p 0 1 0
chr16:29830610|29830964 hsa-miR-2355-3p 0 1 0
chr16:29830610|29830964 hsa-miR-6752-3p 1 0 0
chr16:29830610|29830964 hsa-miR-3940-3p 1 1 0
chr16:29830610|29830964 hsa-miR-4749-3p 1 0 0
chr16:29830610|29830964 hsa-miR-6800-3p 0 1 0
chr16:29830610|29830964 hsa-miR-1207-5p 1 0 0
chr16:29830610|29830964 hsa-miR-6816-5p 1 0 0
chr16:29830610|29830964 hsa-miR-1343-5p 1 0 0
chr16:29830610|29830964 hsa-miR-11181-3p 0 1 0
chr16:29830610|29830964 hsa-miR-1249-5p 1 1 0
chr16:29830610|29830964 hsa-miR-6797-5p 1 1 0
chr16:29830610|29830964 hsa-miR-7111-5p 1 0 0
chr16:29830610|29830964 hsa-miR-5196-5p 0 1 0
chr16:29830610|29830964 hsa-miR-1237-5p 1 0 0
chr16:29830610|29830964 hsa-miR-6794-5p 1 0 0
chr16:29830610|29830964 hsa-miR-6795-5p 1 1 0
chr16:29830610|29830964 hsa-miR-6846-5p 1 0 0
chr16:29830610|29830964 hsa-miR-3187-5p 0 1 0
chr16:29830610|29830964 hsa-miR-6885-5p 1 0 0
chr16:29830610|29830964 hsa-miR-4646-5p 0 1 0
chr16:29830610|29830964 hsa-miR-6792-3p 1 1 0
chr16:29830610|29830964 hsa-miR-6862-3p 1 0 0
chr16:29830610|29830964 hsa-miR-10392-3p 1 0 0
chr16:29830610|29830964 hsa-miR-4723-3p 0 1 0
chr16:29830610|29830964 hsa-miR-6769b-3p 0 1 0
chr16:29830610|29830964 hsa-miR-1234-3p 1 0 0
chr16:29830610|29830964 hsa-miR-4690-3p 0 1 0
chr16:29830610|29830964 hsa-miR-4999-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:29830610|29830964
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MGDREVSLSFGVLFGSGDLVPGPHTSSHLPAGYCLPPCAW
Nucleotide Sequence TTGGGCGATAGAGAGGTTTCTCTCTCATTTGGTGTCCTCTTTGGTAGTGGAGACCTGGTCCCAGGTCCTCACACCTCTTCTCATCTTCCTGCAGGGTACTGTTTGCCCCCATGCGCATGGTGA
CircID chr16:29830610|29830964
ORF Type ORF2
Protein Length 99
Nucleotide Length 297
Protein Sequence MRGGCGGWAVGDPWGCGGLFGWHDGPYPPPSSQAGVALAWAIERFLSHLVSSLVVETWSQVLTPLLIFLQGTVCPHAHGDRPPTSLLHSGQPCVSGCPG
Nucleotide Sequence ATGAGAGGTGGGTGTGGGGGCTGGGCTGTGGGGGATCCTTGGGGATGTGGGGGCCTGTTTGGCTGGCATGATGGTCCTTATCCTCCTCCCTCTTCCCAAGCAGGAGTGGCCCTCGCTTGGGCGATAGAGAGGTTTCTCTCTCATTTGGTGTCCTCTTTGGTAGTGGAGACCTGGTCCCAGGTCCTCACACCTCTTCTCATCTTCCTGCAGGGTACTGTTTGCCCCCATGCGCATGGTGACCGTCCCCCCACGTCACTACTGCACAGTGGCCAACCCTGTGTCTCGGGATGCCCAGGG
CircID chr16:29830610|29830964
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MWGILGDVGACLAGMMVLILLPLPKQEWPSLGR
Nucleotide Sequence CTGTGGGGGATCCTTGGGGATGTGGGGGCCTGTTTGGCTGGCATGATGGTCCTTATCCTCCTCCCTCTTCCCAAGCAGGAGTGGCCCTCGCTTGGGCGATAG
CircID chr16:29830610|29830964
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MFAPMRMVTVPPRHYCTVANPVSRDAQ
Nucleotide Sequence CTGTTTGCCCCCATGCGCATGGTGACCGTCCCCCCACGTCACTACTGCACAGTGGCCAACCCTGTGTCTCGGGATGCCCAG
CircID chr16:29830610|29830964
ORF Type ORF5
Protein Length 97
Nucleotide Length 291
Protein Sequence MRMGANSTLQEDEKRCEDLGPGLHYQRGHQMREKPLYRPSEGHSCLGRGRRIRTIMPAKQAPTSPRIPHSPAPTPTSHCPAGCRSLARPPHGTRCCS
Nucleotide Sequence ATGCGCATGGGGGCAAACAGTACCCTGCAGGAAGATGAGAAGAGGTGTGAGGACCTGGGACCAGGTCTCCACTACCAAAGAGGACACCAAATGAGAGAGAAACCTCTCTATCGCCCAAGCGAGGGCCACTCCTGCTTGGGAAGAGGGAGGAGGATAAGGACCATCATGCCAGCCAAACAGGCCCCCACATCCCCAAGGATCCCCCACAGCCCAGCCCCCACACCCACCTCTCATTGTCCTGCCGGATGTAGGTCTTTGGCCCGACCTCCACACGGGACACGTTGCTGTTCT
CircID chr16:29830610|29830964
ORF Type ORF6
Protein Length 41
Nucleotide Length 126
Protein Sequence MCSSDVGGRSPCAWGQTVPCRKMRRGVRTWDQVSTTKEDTK
Nucleotide Sequence CTGTGCAGTAGTGACGTGGGGGGACGGTCACCATGCGCATGGGGGCAAACAGTACCCTGCAGGAAGATGAGAAGAGGTGTGAGGACCTGGGACCAGGTCTCCACTACCAAAGAGGACACCAAATGA
CircID chr16:29830610|29830964
ORF Type ORF7
Protein Length 32
Nucleotide Length 99
Protein Sequence LGIPRHRVGHCAVVTWGDGHHAHGGKQYPAGR
Nucleotide Sequence CTGGGCATCCCGAGACACAGGGTTGGCCACTGTGCAGTAGTGACGTGGGGGGACGGTCACCATGCGCATGGGGGCAAACAGTACCCTGCAGGAAGATGA
CircID chr16:29830610|29830964
ORF Type ORF8
Protein Length 39
Nucleotide Length 120
Protein Sequence MLGKREEDKDHHASQTGPHIPKDPPQPSPHTHLSLSCRM
Nucleotide Sequence CTGCTTGGGAAGAGGGAGGAGGATAAGGACCATCATGCCAGCCAAACAGGCCCCCACATCCCCAAGGATCCCCCACAGCCCAGCCCCCACACCCACCTCTCATTGTCCTGCCGGATGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab