CircRNA Information

General Information
circRNA Basic Information
CircID chr16:29995343|29995590
Strand -
CircType exon
Host Gene ENSG00000149929.14;
Algorism CIRI2;
Sequence CTGCATCTTCAGCAGCTCCTCCTCCACCAGCCGCTTCAGTGCCTGCTTCTCCTCGGGCTCCAGGTGGCTGCGGCCCGAGTGAGCTAAGTACCTCCGCCGCACGATGGAATGCGTAAGCGTGCTGCAGGGACATGGTGTCAGGACGGAGTCCCGACCCACCCGCGCCCTTTCCAACCCCATCTCCAACCCCCTGGGCACCTGAGGTCCGGGCGGCCTCGGAAGAAGCTACGGGTGAACTCCTGCATCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:29995343|29995590 hsa-miR-99a-5p 0 0 1
chr16:29995343|29995590 hsa-miR-99a-3p 0 0 1
chr16:29995343|29995590 hsa-miR-100-5p 0 0 1
chr16:29995343|29995590 hsa-miR-100-3p 0 0 1
chr16:29995343|29995590 hsa-miR-107 0 0 1
chr16:29995343|29995590 hsa-miR-99b-5p 0 0 1
chr16:29995343|29995590 hsa-miR-99b-3p 0 0 1
chr16:29995343|29995590 hsa-miR-558 0 0 1
chr16:29995343|29995590 hsa-miR-619-5p 0 0 1
chr16:29995343|29995590 hsa-miR-619-3p 0 0 1
chr16:29995343|29995590 hsa-miR-620 0 0 1
chr16:29995343|29995590 hsa-miR-658 0 1 1
chr16:29995343|29995590 hsa-miR-765 1 1 1
chr16:29995343|29995590 hsa-miR-708-5p 0 0 1
chr16:29995343|29995590 hsa-miR-708-3p 0 0 1
chr16:29995343|29995590 hsa-miR-1286 0 0 1
chr16:29995343|29995590 hsa-miR-1270 0 0 1
chr16:29995343|29995590 hsa-miR-125a-3p 0 0 1
chr16:29995343|29995590 hsa-miR-1184 0 1 1
chr16:29995343|29995590 hsa-miR-28-5p 0 0 1
chr16:29995343|29995590 hsa-miR-151-5p 0 0 1
chr16:29995343|29995590 hsa-miR-886-5p 0 0 1
chr16:29995343|29995590 hsa-miR-103 0 0 1
chr16:29995343|29995590 hsa-miR-138 0 0 1
chr16:29995343|29995590 hsa-miR-886-3p 0 0 1
chr16:29995343|29995590 hsa-miR-198 1 0 0
chr16:29995343|29995590 hsa-miR-608 0 1 0
chr16:29995343|29995590 hsa-miR-663a 1 0 0
chr16:29995343|29995590 hsa-miR-762 1 0 0
chr16:29995343|29995590 hsa-miR-764 0 1 0
chr16:29995343|29995590 hsa-miR-1268a 1 0 0
chr16:29995343|29995590 hsa-miR-1275 1 0 0
chr16:29995343|29995590 hsa-miR-3131 1 0 0
chr16:29995343|29995590 hsa-miR-3139 0 1 0
chr16:29995343|29995590 hsa-miR-3147 1 0 0
chr16:29995343|29995590 hsa-miR-3178 0 1 0
chr16:29995343|29995590 hsa-miR-3181 0 1 0
chr16:29995343|29995590 hsa-miR-4269 0 1 0
chr16:29995343|29995590 hsa-miR-4270 1 0 0
chr16:29995343|29995590 hsa-miR-3652 1 0 0
chr16:29995343|29995590 hsa-miR-3665 1 0 0
chr16:29995343|29995590 hsa-miR-1268b 1 0 0
chr16:29995343|29995590 hsa-miR-4449 1 0 0
chr16:29995343|29995590 hsa-miR-4467 1 0 0
chr16:29995343|29995590 hsa-miR-2392 1 0 0
chr16:29995343|29995590 hsa-miR-4507 1 1 0
chr16:29995343|29995590 hsa-miR-4516 1 0 0
chr16:29995343|29995590 hsa-miR-4534 1 0 0
chr16:29995343|29995590 hsa-miR-3960 1 0 0
chr16:29995343|29995590 hsa-miR-4651 1 0 0
chr16:29995343|29995590 hsa-miR-4689 1 0 0
chr16:29995343|29995590 hsa-miR-4706 1 0 0
chr16:29995343|29995590 hsa-miR-4739 1 0 0
chr16:29995343|29995590 hsa-miR-4784 0 1 0
chr16:29995343|29995590 hsa-miR-5194 1 0 0
chr16:29995343|29995590 hsa-miR-5703 0 1 0
chr16:29995343|29995590 hsa-miR-5787 1 0 0
chr16:29995343|29995590 hsa-miR-6085 1 0 0
chr16:29995343|29995590 hsa-miR-6086 1 0 0
chr16:29995343|29995590 hsa-miR-6088 1 0 0
chr16:29995343|29995590 hsa-miR-8072 1 1 0
chr16:29995343|29995590 hsa-miR-12114 1 0 0
chr16:29995343|29995590 hsa-miR-103a-2-5p 0 1 0
chr16:29995343|29995590 hsa-miR-6765-5p 1 0 0
chr16:29995343|29995590 hsa-miR-7106-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6857-5p 1 0 0
chr16:29995343|29995590 hsa-miR-4687-3p 1 0 0
chr16:29995343|29995590 hsa-miR-25-5p 1 1 0
chr16:29995343|29995590 hsa-miR-6799-5p 1 0 0
chr16:29995343|29995590 hsa-miR-8071 1 0 0
chr16:29995343|29995590 hsa-miR-6089 1 1 0
chr16:29995343|29995590 hsa-miR-6880-5p 1 1 0
chr16:29995343|29995590 hsa-miR-7847-3p 1 1 0
chr16:29995343|29995590 hsa-miR-4722-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6890-5p 0 1 0
chr16:29995343|29995590 hsa-miR-6716-5p 1 0 0
chr16:29995343|29995590 hsa-miR-3180-3p 1 0 0
chr16:29995343|29995590 hsa-miR-6796-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6732-5p 1 1 0
chr16:29995343|29995590 hsa-miR-6805-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6798-5p 1 1 0
chr16:29995343|29995590 hsa-miR-6765-3p 0 1 0
chr16:29995343|29995590 hsa-miR-5006-5p 1 0 0
chr16:29995343|29995590 hsa-miR-3934-3p 1 0 0
chr16:29995343|29995590 hsa-miR-6786-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6835-5p 1 0 0
chr16:29995343|29995590 hsa-miR-193b-5p 1 0 0
chr16:29995343|29995590 hsa-miR-4691-3p 0 1 0
chr16:29995343|29995590 hsa-miR-296-3p 1 0 0
chr16:29995343|29995590 hsa-miR-4690-5p 1 1 0
chr16:29995343|29995590 hsa-miR-6749-5p 1 0 0
chr16:29995343|29995590 hsa-miR-4787-5p 1 0 0
chr16:29995343|29995590 hsa-miR-378a-5p 0 1 0
chr16:29995343|29995590 hsa-miR-3162-5p 1 0 0
chr16:29995343|29995590 hsa-miR-7156-3p 0 1 0
chr16:29995343|29995590 hsa-miR-5010-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6730-3p 0 1 0
chr16:29995343|29995590 hsa-miR-4632-3p 0 1 0
chr16:29995343|29995590 hsa-miR-3664-5p 0 1 0
chr16:29995343|29995590 hsa-miR-10400-5p 1 0 0
chr16:29995343|29995590 hsa-miR-1207-5p 1 0 0
chr16:29995343|29995590 hsa-miR-4763-3p 1 0 0
chr16:29995343|29995590 hsa-miR-6769b-5p 1 1 0
chr16:29995343|29995590 hsa-miR-6787-5p 1 1 0
chr16:29995343|29995590 hsa-miR-6812-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6816-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6752-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6756-5p 1 1 0
chr16:29995343|29995590 hsa-miR-6803-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6819-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6851-5p 1 0 0
chr16:29995343|29995590 hsa-miR-7110-5p 1 0 0
chr16:29995343|29995590 hsa-miR-11181-3p 1 1 0
chr16:29995343|29995590 hsa-miR-6722-3p 1 0 0
chr16:29995343|29995590 hsa-miR-1915-3p 1 0 0
chr16:29995343|29995590 hsa-miR-5196-5p 1 0 0
chr16:29995343|29995590 hsa-miR-10396b-5p 1 0 0
chr16:29995343|29995590 hsa-miR-1237-5p 1 0 0
chr16:29995343|29995590 hsa-miR-1909-3p 1 0 0
chr16:29995343|29995590 hsa-miR-4685-5p 1 0 0
chr16:29995343|29995590 hsa-miR-4725-3p 1 0 0
chr16:29995343|29995590 hsa-miR-4726-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6729-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6777-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6794-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6846-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6848-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6858-5p 1 1 0
chr16:29995343|29995590 hsa-miR-10394-3p 1 0 0
chr16:29995343|29995590 hsa-miR-6511b-5p 1 0 0
chr16:29995343|29995590 hsa-miR-3085-5p 1 0 0
chr16:29995343|29995590 hsa-miR-3940-5p 1 1 0
chr16:29995343|29995590 hsa-miR-6855-5p 1 1 0
chr16:29995343|29995590 hsa-miR-4716-3p 1 0 0
chr16:29995343|29995590 hsa-miR-6724-5p 1 0 0
chr16:29995343|29995590 hsa-miR-6791-5p 1 0 0
chr16:29995343|29995590 hsa-miR-3619-5p 1 0 0
chr16:29995343|29995590 hsa-miR-103a-1-5p 0 1 0
chr16:29995343|29995590 hsa-miR-6715b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:29995343|29995590
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence LHLQQLLLHQPLQCLLLLGLQVAAARVS
Nucleotide Sequence CTGCATCTTCAGCAGCTCCTCCTCCACCAGCCGCTTCAGTGCCTGCTTCTCCTCGGGCTCCAGGTGGCTGCGGCCCGAGTGAGCTAA
CircID chr16:29995343|29995590
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MRKRAAGTWCQDGVPTHPRPFQPHLQPPGHLRSGRPRKKLRVNSCI
Nucleotide Sequence ATGCGTAAGCGTGCTGCAGGGACATGGTGTCAGGACGGAGTCCCGACCCACCCGCGCCCTTTCCAACCCCATCTCCAACCCCCTGGGCACCTGAGGTCCGGGCGGCCTCGGAAGAAGCTACGGGTGAACTCCTGCATC
CircID chr16:29995343|29995590
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MECVSVLQGHGVRTESRPTRALSNPISNPLGT
Nucleotide Sequence ATGGAATGCGTAAGCGTGCTGCAGGGACATGGTGTCAGGACGGAGTCCCGACCCACCCGCGCCCTTTCCAACCCCATCTCCAACCCCCTGGGCACCTGA
CircID chr16:29995343|29995590
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MVSGRSPDPPAPFPTPSPTPWAPEVRAASEEATGELLHL
Nucleotide Sequence ATGGTGTCAGGACGGAGTCCCGACCCACCCGCGCCCTTTCCAACCCCATCTCCAACCCCCTGGGCACCTGAGGTCCGGGCGGCCTCGGAAGAAGCTACGGGTGAACTCCTGCATCTC
CircID chr16:29995343|29995590
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MQEFTRSFFRGRPDLRCPGGWRWGWKGRGWVGTPS
Nucleotide Sequence ATGCAGGAGTTCACCCGTAGCTTCTTCCGAGGCCGCCCGGACCTCAGGTGCCCAGGGGGTTGGAGATGGGGTTGGAAAGGGCGCGGGTGGGTCGGGACTCCGTCCTGA
CircID chr16:29995343|29995590
ORF Type ORF6
Protein Length 44
Nucleotide Length 132
Protein Sequence MSLQHAYAFHRAAEVLSSLGPQPPGARGEAGTEAAGGGGAAEDA
Nucleotide Sequence ATGTCCCTGCAGCACGCTTACGCATTCCATCGTGCGGCGGAGGTACTTAGCTCACTCGGGCCGCAGCCACCTGGAGCCCGAGGAGAAGCAGGCACTGAAGCGGCTGGTGGAGGAGGAGCTGCTGAAGATGCA
CircID chr16:29995343|29995590
ORF Type ORF7
Protein Length 62
Nucleotide Length 186
Protein Sequence MEMGLERARVGRDSVLTPCPCSTLTHSIVRRRYLAHSGRSHLEPEEKQALKRLVEEELLKMQ
Nucleotide Sequence TTGGAGATGGGGTTGGAAAGGGCGCGGGTGGGTCGGGACTCCGTCCTGACACCATGTCCCTGCAGCACGCTTACGCATTCCATCGTGCGGCGGAGGTACTTAGCTCACTCGGGCCGCAGCCACCTGGAGCCCGAGGAGAAGCAGGCACTGAAGCGGCTGGTGGAGGAGGAGCTGCTGAAGATGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab