CircRNA Information

General Information
circRNA Basic Information
CircID chr16:30001664|30001844
Strand +
CircType exon
Host Gene ENSG00000169592.13;
Algorism CIRI2;
Sequence CCGGTCTGGGGCTACCTGGCATCACACAACACGCCCCCCTGGGAAAATGAGCCTGGCCCCGCTACACTGCAGCCATGAAAGGGCGGGATCCCTGGCATCTGCACACCGGGTCCTCCAAGGCTGGTTCTGCCCTGATTTGTCTCCATACAAGCCTGTAAGCCGAGACTTCTGTGATCCACCC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:30001664|30001844 hsa-miR-484 0 1 1
chr16:30001664|30001844 hsa-miR-432-5p 0 0 1
chr16:30001664|30001844 hsa-miR-432-3p 0 0 1
chr16:30001664|30001844 hsa-miR-600 0 0 1
chr16:30001664|30001844 hsa-miR-604 0 0 1
chr16:30001664|30001844 hsa-miR-643 0 1 1
chr16:30001664|30001844 hsa-miR-647 0 0 1
chr16:30001664|30001844 hsa-miR-765 0 0 1
chr16:30001664|30001844 hsa-miR-744-5p 0 0 1
chr16:30001664|30001844 hsa-miR-744-3p 0 0 1
chr16:30001664|30001844 hsa-miR-297 0 0 1
chr16:30001664|30001844 hsa-miR-1249-5p 0 0 1
chr16:30001664|30001844 hsa-miR-1249-3p 0 0 1
chr16:30001664|30001844 hsa-miR-1307-5p 0 0 1
chr16:30001664|30001844 hsa-miR-1307-3p 0 0 1
chr16:30001664|30001844 hsa-miR-1268 0 0 1
chr16:30001664|30001844 hsa-miR-768-5p 0 0 1
chr16:30001664|30001844 hsa-miR-147 0 0 1
chr16:30001664|30001844 hsa-miR-611 1 0 0
chr16:30001664|30001844 hsa-miR-638 1 0 0
chr16:30001664|30001844 hsa-miR-663a 1 0 0
chr16:30001664|30001844 hsa-miR-1268a 0 1 0
chr16:30001664|30001844 hsa-miR-2861 1 0 0
chr16:30001664|30001844 hsa-miR-3159 1 0 0
chr16:30001664|30001844 hsa-miR-3196 1 0 0
chr16:30001664|30001844 hsa-miR-1268b 0 1 0
chr16:30001664|30001844 hsa-miR-4430 1 0 0
chr16:30001664|30001844 hsa-miR-4438 0 1 0
chr16:30001664|30001844 hsa-miR-4449 1 0 0
chr16:30001664|30001844 hsa-miR-4488 1 0 0
chr16:30001664|30001844 hsa-miR-4688 1 0 0
chr16:30001664|30001844 hsa-miR-4689 1 0 0
chr16:30001664|30001844 hsa-miR-4751 1 1 0
chr16:30001664|30001844 hsa-miR-5090 1 0 0
chr16:30001664|30001844 hsa-miR-5787 1 0 0
chr16:30001664|30001844 hsa-miR-6745 0 1 0
chr16:30001664|30001844 hsa-miR-8089 1 0 0
chr16:30001664|30001844 hsa-miR-17-3p 0 1 0
chr16:30001664|30001844 hsa-miR-6765-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6894-5p 1 0 0
chr16:30001664|30001844 hsa-miR-4687-3p 1 0 0
chr16:30001664|30001844 hsa-miR-1227-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6089 1 0 0
chr16:30001664|30001844 hsa-miR-4695-5p 1 0 0
chr16:30001664|30001844 hsa-miR-7154-3p 0 1 0
chr16:30001664|30001844 hsa-miR-4755-3p 0 1 0
chr16:30001664|30001844 hsa-miR-6727-5p 1 1 0
chr16:30001664|30001844 hsa-miR-197-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6732-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6805-5p 1 0 0
chr16:30001664|30001844 hsa-miR-3194-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6810-5p 1 0 0
chr16:30001664|30001844 hsa-miR-1226-5p 1 0 0
chr16:30001664|30001844 hsa-miR-4783-3p 0 1 0
chr16:30001664|30001844 hsa-miR-4640-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6753-5p 1 0 0
chr16:30001664|30001844 hsa-miR-3691-5p 1 0 0
chr16:30001664|30001844 hsa-miR-889-5p 0 1 0
chr16:30001664|30001844 hsa-miR-6824-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6818-5p 0 1 0
chr16:30001664|30001844 hsa-miR-6882-5p 0 1 0
chr16:30001664|30001844 hsa-miR-6816-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6775-5p 1 0 0
chr16:30001664|30001844 hsa-miR-1343-5p 1 0 0
chr16:30001664|30001844 hsa-miR-5001-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6752-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6722-3p 1 0 0
chr16:30001664|30001844 hsa-miR-6751-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6879-5p 0 1 0
chr16:30001664|30001844 hsa-miR-1915-3p 0 1 0
chr16:30001664|30001844 hsa-miR-10396b-5p 1 0 0
chr16:30001664|30001844 hsa-miR-1237-5p 1 0 0
chr16:30001664|30001844 hsa-miR-328-5p 1 0 0
chr16:30001664|30001844 hsa-miR-4685-5p 1 0 0
chr16:30001664|30001844 hsa-miR-4745-5p 1 0 0
chr16:30001664|30001844 hsa-miR-4749-5p 1 0 0
chr16:30001664|30001844 hsa-miR-6735-5p 0 1 0
chr16:30001664|30001844 hsa-miR-6848-5p 1 0 0
chr16:30001664|30001844 hsa-miR-4436b-3p 0 1 0
chr16:30001664|30001844 hsa-miR-1266-5p 1 0 0
chr16:30001664|30001844 hsa-miR-7843-5p 1 1 0
chr16:30001664|30001844 hsa-miR-7151-3p 0 1 0
chr16:30001664|30001844 hsa-miR-6724-5p 1 0 0
chr16:30001664|30001844 hsa-miR-363-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:30001664|30001844
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MSLAPLHCSHERAGSLASAHRVLQGWFCPDLSPYKPVSRDFCDPP
Nucleotide Sequence ATGAGCCTGGCCCCGCTACACTGCAGCCATGAAAGGGCGGGATCCCTGGCATCTGCACACCGGGTCCTCCAAGGCTGGTTCTGCCCTGATTTGTCTCCATACAAGCCTGTAAGCCGAGACTTCTGTGATCCACCC
CircID chr16:30001664|30001844
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MKGRDPWHLHTGSSKAGSALICLHTSL
Nucleotide Sequence ATGAAAGGGCGGGATCCCTGGCATCTGCACACCGGGTCCTCCAAGGCTGGTTCTGCCCTGATTTGTCTCCATACAAGCCTGTAA
CircID chr16:30001664|30001844
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MYGDKSGQNQPWRTRCADARDPALSWLQCSGARLIFPGGRVV
Nucleotide Sequence TTGTATGGAGACAAATCAGGGCAGAACCAGCCTTGGAGGACCCGGTGTGCAGATGCCAGGGATCCCGCCCTTTCATGGCTGCAGTGTAGCGGGGCCAGGCTCATTTTCCCAGGGGGGCGTGTTGTGTGA
CircID chr16:30001664|30001844
ORF Type ORF4
Protein Length 44
Nucleotide Length 135
Protein Sequence METNQGRTSLGGPGVQMPGIPPFHGCSVAGPGSFSQGGVLCDAR
Nucleotide Sequence ATGGAGACAAATCAGGGCAGAACCAGCCTTGGAGGACCCGGTGTGCAGATGCCAGGGATCCCGCCCTTTCATGGCTGCAGTGTAGCGGGGCCAGGCTCATTTTCCCAGGGGGGCGTGTTGTGTGATGCCAGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab