CircRNA Information

General Information
circRNA Basic Information
CircID chr16:30002583|30002731
Strand -
CircType exon
Host Gene ENSG00000169592.13;
Algorism CIRI2;
Sequence CTGGTGTGGGCTGTGCGGGAGAGAGGCCAGGATGCCTCCAGGGCTTTAGTCTGAGCACGAGTGGAGTCTCCCTCCCTGGAGATGGGAGGGCTGTGGGACCACAGGCTTGGAGGAAAACTGAGTCTGGCCGCGGATGTGTCAGATGCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:30002583|30002731 hsa-miR-650 0 0 1
chr16:30002583|30002731 hsa-miR-766-5p 0 0 1
chr16:30002583|30002731 hsa-miR-766-3p 0 0 1
chr16:30002583|30002731 hsa-miR-1238-5p 0 0 1
chr16:30002583|30002731 hsa-miR-1238-3p 0 0 1
chr16:30002583|30002731 hsa-miR-1321 0 0 1
chr16:30002583|30002731 hsa-miR-188-3p 0 0 1
chr16:30002583|30002731 hsa-miR-484 1 0 0
chr16:30002583|30002731 hsa-miR-572 1 0 0
chr16:30002583|30002731 hsa-miR-637 1 1 0
chr16:30002583|30002731 hsa-miR-3183 0 1 0
chr16:30002583|30002731 hsa-miR-4308 0 1 0
chr16:30002583|30002731 hsa-miR-4290 0 1 0
chr16:30002583|30002731 hsa-miR-4330 0 1 0
chr16:30002583|30002731 hsa-miR-3612 0 1 0
chr16:30002583|30002731 hsa-miR-4441 0 1 0
chr16:30002583|30002731 hsa-miR-4479 1 0 0
chr16:30002583|30002731 hsa-miR-4636 0 1 0
chr16:30002583|30002731 hsa-miR-668-3p 1 0 0
chr16:30002583|30002731 hsa-miR-671-5p 1 0 0
chr16:30002583|30002731 hsa-miR-7110-3p 1 1 0
chr16:30002583|30002731 hsa-miR-615-3p 0 1 0
chr16:30002583|30002731 hsa-miR-6815-3p 1 1 0
chr16:30002583|30002731 hsa-miR-1343-3p 1 0 0
chr16:30002583|30002731 hsa-miR-3186-5p 1 0 0
chr16:30002583|30002731 hsa-miR-6878-3p 0 1 0
chr16:30002583|30002731 hsa-miR-5196-3p 1 1 0
chr16:30002583|30002731 hsa-miR-6743-3p 1 0 0
chr16:30002583|30002731 hsa-miR-6813-3p 1 0 0
chr16:30002583|30002731 hsa-miR-6730-3p 0 1 0
chr16:30002583|30002731 hsa-miR-6856-3p 0 1 0
chr16:30002583|30002731 hsa-miR-6777-3p 1 0 0
chr16:30002583|30002731 hsa-miR-25-3p 1 0 0
chr16:30002583|30002731 hsa-miR-4433a-5p 0 1 0
chr16:30002583|30002731 hsa-miR-6754-5p 0 1 0
chr16:30002583|30002731 hsa-miR-4685-3p 1 0 0
chr16:30002583|30002731 hsa-miR-642b-3p 0 1 0
chr16:30002583|30002731 hsa-miR-6885-5p 1 0 0
chr16:30002583|30002731 hsa-miR-4757-5p 1 1 0
chr16:30002583|30002731 hsa-miR-6792-3p 0 1 0
chr16:30002583|30002731 hsa-miR-4723-3p 0 1 0
chr16:30002583|30002731 hsa-miR-6769b-3p 0 1 0
chr16:30002583|30002731 hsa-miR-4756-5p 0 1 0
chr16:30002583|30002731 hsa-miR-6744-3p 1 1 0
chr16:30002583|30002731 hsa-miR-4691-5p 0 1 0
chr16:30002583|30002731 hsa-miR-6781-3p 1 1 0
chr16:30002583|30002731 hsa-miR-6807-3p 1 0 0
chr16:30002583|30002731 hsa-miR-92b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr16:30002583|30002731
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MSTSGVSLPGDGRAVGPQAWRKTESGRGCVRCH
Nucleotide Sequence CTGAGCACGAGTGGAGTCTCCCTCCCTGGAGATGGGAGGGCTGTGGGACCACAGGCTTGGAGGAAAACTGAGTCTGGCCGCGGATGTGTCAGATGCCAT

CircID chr16:30002583|30002731
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MASDTSAARLSFPPSLWSHSPPISREGDSTRAQTKALEASWPLSRTAHT
Nucleotide Sequence ATGGCATCTGACACATCCGCGGCCAGACTCAGTTTTCCTCCAAGCCTGTGGTCCCACAGCCCTCCCATCTCCAGGGAGGGAGACTCCACTCGTGCTCAGACTAAAGCCCTGGAGGCATCCTGGCCTCTCTCCCGCACAGCCCACACC

CircID chr16:30002583|30002731
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MTHPRPDSVFLQACGPTALPSPGRETPLVLRLKPWRHPGLSPAQPTP
Nucleotide Sequence CTGACACATCCGCGGCCAGACTCAGTTTTCCTCCAAGCCTGTGGTCCCACAGCCCTCCCATCTCCAGGGAGGGAGACTCCACTCGTGCTCAGACTAAAGCCCTGGAGGCATCCTGGCCTCTCTCCCGCACAGCCCACACCA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites