CircRNA Information

General Information
circRNA Basic Information
CircID chr16:30070009|30070218
Strand +
CircType exon
Host Gene ENSG00000149925.15;
Algorism CIRI2;
Sequence CTCCGCCAGGGCTCGCTTGACATACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:30070009|30070218 hsa-miR-484 0 0 1
chr16:30070009|30070218 hsa-miR-661 0 1 1
chr16:30070009|30070218 hsa-miR-541-5p 0 0 1
chr16:30070009|30070218 hsa-miR-541-3p 0 0 1
chr16:30070009|30070218 hsa-miR-940 0 0 1
chr16:30070009|30070218 hsa-miR-1229-5p 0 0 1
chr16:30070009|30070218 hsa-miR-1229-3p 0 0 1
chr16:30070009|30070218 hsa-miR-1202 0 0 1
chr16:30070009|30070218 hsa-miR-548k 0 0 1
chr16:30070009|30070218 hsa-miR-1293 0 0 1
chr16:30070009|30070218 hsa-miR-1253 0 0 1
chr16:30070009|30070218 hsa-miR-615-3p 0 0 1
chr16:30070009|30070218 hsa-miR-654-5p 0 0 1
chr16:30070009|30070218 hsa-miR-1207-5p 1 1 1
chr16:30070009|30070218 hsa-miR-483-3p 0 0 1
chr16:30070009|30070218 hsa-miR-1233 0 0 1
chr16:30070009|30070218 hsa-miR-550 0 0 1
chr16:30070009|30070218 hsa-miR-642 0 0 1
chr16:30070009|30070218 hsa-miR-1254 0 0 1
chr16:30070009|30070218 hsa-miR-129-3p 0 0 1
chr16:30070009|30070218 hsa-miR-1295 0 0 1
chr16:30070009|30070218 hsa-miR-595 1 0 0
chr16:30070009|30070218 hsa-miR-612 1 0 0
chr16:30070009|30070218 hsa-miR-762 1 1 0
chr16:30070009|30070218 hsa-miR-2861 1 0 0
chr16:30070009|30070218 hsa-miR-3147 1 0 0
chr16:30070009|30070218 hsa-miR-4490 0 1 0
chr16:30070009|30070218 hsa-miR-4516 0 1 0
chr16:30070009|30070218 hsa-miR-4651 0 1 0
chr16:30070009|30070218 hsa-miR-4656 1 0 0
chr16:30070009|30070218 hsa-miR-4739 1 1 0
chr16:30070009|30070218 hsa-miR-4741 1 0 0
chr16:30070009|30070218 hsa-miR-5191 0 1 0
chr16:30070009|30070218 hsa-miR-5192 1 1 0
chr16:30070009|30070218 hsa-miR-5704 0 1 0
chr16:30070009|30070218 hsa-miR-5787 0 1 0
chr16:30070009|30070218 hsa-miR-6069 1 0 0
chr16:30070009|30070218 hsa-miR-6134 0 1 0
chr16:30070009|30070218 hsa-miR-6844 0 1 0
chr16:30070009|30070218 hsa-miR-6860 1 0 0
chr16:30070009|30070218 hsa-miR-8054 0 1 0
chr16:30070009|30070218 hsa-miR-12126 0 1 0
chr16:30070009|30070218 hsa-miR-6861-5p 1 1 0
chr16:30070009|30070218 hsa-miR-1233-3p 0 1 0
chr16:30070009|30070218 hsa-miR-6892-3p 0 1 0
chr16:30070009|30070218 hsa-miR-6799-5p 1 1 0
chr16:30070009|30070218 hsa-miR-4722-5p 0 1 0
chr16:30070009|30070218 hsa-miR-6762-3p 1 1 0
chr16:30070009|30070218 hsa-miR-6721-5p 0 1 0
chr16:30070009|30070218 hsa-miR-6776-5p 0 1 0
chr16:30070009|30070218 hsa-miR-6832-3p 0 1 0
chr16:30070009|30070218 hsa-miR-6748-5p 1 1 0
chr16:30070009|30070218 hsa-miR-877-3p 0 1 0
chr16:30070009|30070218 hsa-miR-185-3p 1 0 0
chr16:30070009|30070218 hsa-miR-6829-5p 0 1 0
chr16:30070009|30070218 hsa-miR-6732-5p 0 1 0
chr16:30070009|30070218 hsa-miR-23a-5p 1 1 0
chr16:30070009|30070218 hsa-miR-6798-5p 1 0 0
chr16:30070009|30070218 hsa-miR-3944-3p 1 1 0
chr16:30070009|30070218 hsa-miR-3691-5p 0 1 0
chr16:30070009|30070218 hsa-miR-1228-5p 1 0 0
chr16:30070009|30070218 hsa-miR-6830-5p 1 0 0
chr16:30070009|30070218 hsa-miR-7160-3p 1 0 0
chr16:30070009|30070218 hsa-miR-6867-3p 0 1 0
chr16:30070009|30070218 hsa-miR-6886-3p 0 1 0
chr16:30070009|30070218 hsa-miR-5088-3p 0 1 0
chr16:30070009|30070218 hsa-miR-4283 1 0 0
chr16:30070009|30070218 hsa-miR-6802-3p 0 1 0
chr16:30070009|30070218 hsa-miR-4714-5p 0 1 0
chr16:30070009|30070218 hsa-miR-651-3p 0 1 0
chr16:30070009|30070218 hsa-miR-212-3p 0 1 0
chr16:30070009|30070218 hsa-miR-4763-3p 1 1 0
chr16:30070009|30070218 hsa-miR-6769b-5p 1 1 0
chr16:30070009|30070218 hsa-miR-6893-5p 1 1 0
chr16:30070009|30070218 hsa-miR-6756-5p 1 1 0
chr16:30070009|30070218 hsa-miR-6769a-5p 1 0 0
chr16:30070009|30070218 hsa-miR-6819-5p 1 0 0
chr16:30070009|30070218 hsa-miR-6851-5p 0 1 0
chr16:30070009|30070218 hsa-miR-6751-5p 1 0 0
chr16:30070009|30070218 hsa-miR-6808-5p 1 1 0
chr16:30070009|30070218 hsa-miR-6879-5p 1 0 0
chr16:30070009|30070218 hsa-miR-320a-5p 0 1 0
chr16:30070009|30070218 hsa-miR-6754-3p 0 1 0
chr16:30070009|30070218 hsa-miR-3620-5p 1 0 0
chr16:30070009|30070218 hsa-miR-328-5p 1 0 0
chr16:30070009|30070218 hsa-miR-3679-5p 1 1 0
chr16:30070009|30070218 hsa-miR-6791-5p 1 0 0
chr16:30070009|30070218 hsa-miR-6753-3p 1 0 0
chr16:30070009|30070218 hsa-miR-550a-5p 1 1 0
chr16:30070009|30070218 hsa-miR-26a-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:30070009|30070218
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MTARSVLSLTGKAVGLSRERGGVRRALLRVPSTQAPCPPPAYPYQGSLDIL
Nucleotide Sequence CTGACCGCTCGGAGTGTACTTTCCTTGACAGGCAAGGCTGTTGGCCTAAGCAGGGAGAGGGGTGGAGTGAGAAGGGCTCTTCTCCGAGTCCCATCCACCCAGGCACCCTGCCCACCTCCTGCCTATCCTTACCAGGGCTCGCTTGACATACTC
CircID chr16:30070009|30070218
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MVRIGRRWAGCLGGWDSEKSPSHSTPLPA
Nucleotide Sequence CTGGTAAGGATAGGCAGGAGGTGGGCAGGGTGCCTGGGTGGATGGGACTCGGAGAAGAGCCCTTCTCACTCCACCCCTCTCCCTGCTTAG
CircID chr16:30070009|30070218
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MLRPTALPVKESTLRAVRLGLLPASPSSSLTTPIKR
Nucleotide Sequence CTGCTTAGGCCAACAGCCTTGCCTGTCAAGGAAAGTACACTCCGAGCGGTCAGGCTGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTATTAAGCGG
CircID chr16:30070009|30070218
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MGLGEEPFSLHPSPCLGQQPCLSRKVHSERSGWGCCQRVPLRL
Nucleotide Sequence ATGGGACTCGGAGAAGAGCCCTTCTCACTCCACCCCTCTCCCTGCTTAGGCCAACAGCCTTGCCTGTCAAGGAAAGTACACTCCGAGCGGTCAGGCTGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab