CircRNA Information

General Information
circRNA Basic Information
CircID chr16:3022034|3022334
Strand +
CircType exon
Host Gene ENSG00000006327.12;
Algorism CIRI2;
Sequence TCTCCCCAAAATAAATATCTCCTCCCCGCTTTGGGGAGTTGGGGGGGTCTGTATCTTAGGGCCAGCCCTCCTAGTGGGCCAGCCCCCTAGTGTTAAAAATAGGTCCCTAACCCCCCAGGGTGACCCCCGTGGTGGAATTTCAGGACATCTGAGTGAGTGGGGCCTAGTGTCAAGTCTGCCCCCCAAGTCAGCCTGGCCCCCAGGGCCTCTAGGAAGGAGGGCACCCCCCTCCCCTGTGCAAATGCTGCAGTTCCTTAGTCAGTGTCAGCTGTTTTGTGTGAGCCAGCGTGAGGCTCCCTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:3022034|3022334 hsa-miR-107 1 1 1
chr16:3022034|3022334 hsa-miR-141-5p 0 0 1
chr16:3022034|3022334 hsa-miR-141-3p 0 0 1
chr16:3022034|3022334 hsa-miR-149-5p 0 0 1
chr16:3022034|3022334 hsa-miR-149-3p 0 0 1
chr16:3022034|3022334 hsa-miR-200a-5p 0 0 1
chr16:3022034|3022334 hsa-miR-200a-3p 0 0 1
chr16:3022034|3022334 hsa-miR-377-5p 0 0 1
chr16:3022034|3022334 hsa-miR-377-3p 0 0 1
chr16:3022034|3022334 hsa-miR-328-5p 0 0 1
chr16:3022034|3022334 hsa-miR-328-3p 0 0 1
chr16:3022034|3022334 hsa-miR-384 0 0 1
chr16:3022034|3022334 hsa-miR-507 0 0 1
chr16:3022034|3022334 hsa-miR-557 0 1 1
chr16:3022034|3022334 hsa-miR-637 1 1 1
chr16:3022034|3022334 hsa-miR-765 0 0 1
chr16:3022034|3022334 hsa-miR-939-5p 0 0 1
chr16:3022034|3022334 hsa-miR-939-3p 0 0 1
chr16:3022034|3022334 hsa-miR-1291 1 1 1
chr16:3022034|3022334 hsa-miR-1275 0 0 1
chr16:3022034|3022334 hsa-miR-486-3p 0 1 1
chr16:3022034|3022334 hsa-miR-1184 0 0 1
chr16:3022034|3022334 hsa-miR-342-5p 0 1 1
chr16:3022034|3022334 hsa-miR-509-3-5p 0 0 1
chr16:3022034|3022334 hsa-miR-509-5p 0 0 1
chr16:3022034|3022334 hsa-miR-342-3p 0 1 1
chr16:3022034|3022334 hsa-miR-103 0 0 1
chr16:3022034|3022334 hsa-miR-220c 0 0 1
chr16:3022034|3022334 hsa-miR-514 0 0 1
chr16:3022034|3022334 hsa-miR-24 0 0 1
chr16:3022034|3022334 hsa-miR-762 0 1 0
chr16:3022034|3022334 hsa-miR-760 1 0 0
chr16:3022034|3022334 hsa-miR-2861 1 0 0
chr16:3022034|3022334 hsa-miR-4281 1 0 0
chr16:3022034|3022334 hsa-miR-4278 0 1 0
chr16:3022034|3022334 hsa-miR-4292 0 1 0
chr16:3022034|3022334 hsa-miR-4290 0 1 0
chr16:3022034|3022334 hsa-miR-3929 0 1 0
chr16:3022034|3022334 hsa-miR-4440 1 0 0
chr16:3022034|3022334 hsa-miR-4488 1 0 0
chr16:3022034|3022334 hsa-miR-4492 0 1 0
chr16:3022034|3022334 hsa-miR-4498 0 1 0
chr16:3022034|3022334 hsa-miR-4507 1 0 0
chr16:3022034|3022334 hsa-miR-4511 0 1 0
chr16:3022034|3022334 hsa-miR-1587 1 0 0
chr16:3022034|3022334 hsa-miR-4656 1 0 0
chr16:3022034|3022334 hsa-miR-4706 1 1 0
chr16:3022034|3022334 hsa-miR-4741 1 0 0
chr16:3022034|3022334 hsa-miR-5090 1 1 0
chr16:3022034|3022334 hsa-miR-8089 1 0 0
chr16:3022034|3022334 hsa-miR-12120 0 1 0
chr16:3022034|3022334 hsa-miR-12126 1 1 0
chr16:3022034|3022334 hsa-miR-671-5p 1 0 0
chr16:3022034|3022334 hsa-miR-6825-5p 0 1 0
chr16:3022034|3022334 hsa-miR-8071 1 0 0
chr16:3022034|3022334 hsa-miR-1227-5p 1 0 0
chr16:3022034|3022334 hsa-miR-6089 1 0 0
chr16:3022034|3022334 hsa-miR-874-5p 1 1 0
chr16:3022034|3022334 hsa-miR-185-3p 1 1 0
chr16:3022034|3022334 hsa-miR-6732-5p 1 0 0
chr16:3022034|3022334 hsa-miR-6805-5p 1 1 0
chr16:3022034|3022334 hsa-miR-2467-5p 1 0 0
chr16:3022034|3022334 hsa-miR-30b-3p 0 1 0
chr16:3022034|3022334 hsa-miR-5008-5p 1 1 0
chr16:3022034|3022334 hsa-miR-6852-5p 0 1 0
chr16:3022034|3022334 hsa-miR-7109-5p 0 1 0
chr16:3022034|3022334 hsa-miR-4640-5p 0 1 0
chr16:3022034|3022334 hsa-miR-5580-5p 0 1 0
chr16:3022034|3022334 hsa-miR-103a-3p 1 1 0
chr16:3022034|3022334 hsa-miR-4667-3p 0 1 0
chr16:3022034|3022334 hsa-miR-4446-3p 0 1 0
chr16:3022034|3022334 hsa-miR-6824-5p 1 0 0
chr16:3022034|3022334 hsa-miR-3191-3p 1 0 0
chr16:3022034|3022334 hsa-miR-4758-3p 0 1 0
chr16:3022034|3022334 hsa-miR-2114-3p 0 1 0
chr16:3022034|3022334 hsa-miR-5088-3p 0 1 0
chr16:3022034|3022334 hsa-miR-6859-3p 0 1 0
chr16:3022034|3022334 hsa-miR-4704-5p 0 1 0
chr16:3022034|3022334 hsa-miR-4771 0 1 0
chr16:3022034|3022334 hsa-miR-18b-3p 0 1 0
chr16:3022034|3022334 hsa-miR-3680-5p 0 1 0
chr16:3022034|3022334 hsa-miR-6816-5p 1 0 0
chr16:3022034|3022334 hsa-miR-5001-5p 1 1 0
chr16:3022034|3022334 hsa-miR-6743-5p 1 0 0
chr16:3022034|3022334 hsa-miR-6752-5p 1 0 0
chr16:3022034|3022334 hsa-miR-6756-5p 1 0 0
chr16:3022034|3022334 hsa-miR-6803-5p 1 1 0
chr16:3022034|3022334 hsa-miR-6842-5p 0 1 0
chr16:3022034|3022334 hsa-miR-6722-3p 1 0 0
chr16:3022034|3022334 hsa-miR-6751-5p 1 1 0
chr16:3022034|3022334 hsa-miR-7111-5p 1 0 0
chr16:3022034|3022334 hsa-miR-3620-5p 1 0 0
chr16:3022034|3022334 hsa-miR-4728-5p 0 1 0
chr16:3022034|3022334 hsa-miR-1237-5p 1 0 0
chr16:3022034|3022334 hsa-miR-1909-3p 1 0 0
chr16:3022034|3022334 hsa-miR-4649-5p 1 0 0
chr16:3022034|3022334 hsa-miR-6795-5p 1 0 0
chr16:3022034|3022334 hsa-miR-6846-5p 1 1 0
chr16:3022034|3022334 hsa-miR-6848-5p 1 1 0
chr16:3022034|3022334 hsa-miR-6845-5p 0 1 0
chr16:3022034|3022334 hsa-miR-3940-5p 1 0 0
chr16:3022034|3022334 hsa-miR-4664-5p 0 1 0
chr16:3022034|3022334 hsa-miR-6791-5p 1 1 0
chr16:3022034|3022334 hsa-miR-6823-3p 0 1 0
chr16:3022034|3022334 hsa-miR-549a-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:3022034|3022334
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MSEWGLVSSLPPKSAWPPGPLGRRAPPSPVQMLQFLSQCQLFCVSQREAPF
Nucleotide Sequence CTGAGTGAGTGGGGCCTAGTGTCAAGTCTGCCCCCCAAGTCAGCCTGGCCCCCAGGGCCTCTAGGAAGGAGGGCACCCCCCTCCCCTGTGCAAATGCTGCAGTTCCTTAGTCAGTGTCAGCTGTTTTGTGTGAGCCAGCGTGAGGCTCCCTTT
CircID chr16:3022034|3022334
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MAHTKQLTLTKELQHLHRGGGCPPS
Nucleotide Sequence CTGGCTCACACAAAACAGCTGACACTGACTAAGGAACTGCAGCATTTGCACAGGGGAGGGGGGTGCCCTCCTTCCTAG
CircID chr16:3022034|3022334
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MGGRLDTRPHSLRCPEIPPRGSPWGVRDLFLTLGGWPTRRAGPKIQTPPTPQSGEEIFILGR
Nucleotide Sequence TTGGGGGGCAGACTTGACACTAGGCCCCACTCACTCAGATGTCCTGAAATTCCACCACGGGGGTCACCCTGGGGGGTTAGGGACCTATTTTTAACACTAGGGGGCTGGCCCACTAGGAGGGCTGGCCCTAAGATACAGACCCCCCCAACTCCCCAAAGCGGGGAGGAGATATTTATTTTGGGGAGA
CircID chr16:3022034|3022334
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MGARLTWGADLTLGPTHSDVLKFHHGGHPGGLGTYF
Nucleotide Sequence CTGGGGGCCAGGCTGACTTGGGGGGCAGACTTGACACTAGGCCCCACTCACTCAGATGTCCTGAAATTCCACCACGGGGGTCACCCTGGGGGGTTAGGGACCTATTTTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab