CircRNA Information

General Information
circRNA Basic Information
CircID chr16:30669930|30670120
Strand -
CircType exon
Host Gene ENSG00000156860.14;
Algorism CIRI2;
Sequence CTTTGCCCCTGTAAGGGCCTCTAGGCCCTGGGCCTGCCTCCCCAAGGGCTCACTAAGCCAGAGGCCAAAGTGCCCCCTCCCGTTCACCTACCACCCAAGTCCTCATGCCCTCCGAGGGCTGGGGGAGGAGGGGCTCAAGGAAGGGGGGTTCCATGTACATATTTATCACCCCTTTCACATAGCCCCAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:30669930|30670120 hsa-miR-149-5p 0 0 1
chr16:30669930|30670120 hsa-miR-149-3p 0 0 1
chr16:30669930|30670120 hsa-miR-488-5p 0 0 1
chr16:30669930|30670120 hsa-miR-488-3p 0 0 1
chr16:30669930|30670120 hsa-miR-600 0 0 1
chr16:30669930|30670120 hsa-miR-635 0 0 1
chr16:30669930|30670120 hsa-miR-650 0 1 1
chr16:30669930|30670120 hsa-miR-887-5p 0 0 1
chr16:30669930|30670120 hsa-miR-887-3p 0 0 1
chr16:30669930|30670120 hsa-miR-921 0 0 1
chr16:30669930|30670120 hsa-miR-938 0 0 1
chr16:30669930|30670120 hsa-miR-939-5p 0 0 1
chr16:30669930|30670120 hsa-miR-939-3p 0 0 1
chr16:30669930|30670120 hsa-miR-940 0 0 1
chr16:30669930|30670120 hsa-miR-1293 0 0 1
chr16:30669930|30670120 hsa-miR-1262 0 0 1
chr16:30669930|30670120 hsa-miR-1827 0 0 1
chr16:30669930|30670120 hsa-miR-1225-3p 0 1 1
chr16:30669930|30670120 hsa-miR-1224-5p 1 1 1
chr16:30669930|30670120 hsa-miR-361-3p 0 0 1
chr16:30669930|30670120 hsa-miR-502-5p 0 0 1
chr16:30669930|30670120 hsa-miR-1233 0 0 1
chr16:30669930|30670120 hsa-miR-129-3p 0 0 1
chr16:30669930|30670120 hsa-miR-762 1 0 0
chr16:30669930|30670120 hsa-miR-1268a 1 0 0
chr16:30669930|30670120 hsa-miR-2861 1 0 0
chr16:30669930|30670120 hsa-miR-3131 1 0 0
chr16:30669930|30670120 hsa-miR-3188 1 0 0
chr16:30669930|30670120 hsa-miR-3196 1 0 0
chr16:30669930|30670120 hsa-miR-3924 0 1 0
chr16:30669930|30670120 hsa-miR-3936 0 1 0
chr16:30669930|30670120 hsa-miR-1268b 1 0 0
chr16:30669930|30670120 hsa-miR-4488 1 0 0
chr16:30669930|30670120 hsa-miR-4489 0 1 0
chr16:30669930|30670120 hsa-miR-4651 1 0 0
chr16:30669930|30670120 hsa-miR-4689 1 0 0
chr16:30669930|30670120 hsa-miR-4721 1 0 0
chr16:30669930|30670120 hsa-miR-5193 0 1 0
chr16:30669930|30670120 hsa-miR-5194 1 0 0
chr16:30669930|30670120 hsa-miR-5787 1 0 0
chr16:30669930|30670120 hsa-miR-8089 1 0 0
chr16:30669930|30670120 hsa-miR-6749-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6765-5p 1 0 0
chr16:30669930|30670120 hsa-miR-671-5p 1 0 0
chr16:30669930|30670120 hsa-miR-1233-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6799-5p 1 0 0
chr16:30669930|30670120 hsa-miR-8071 1 1 0
chr16:30669930|30670120 hsa-miR-3622b-5p 1 0 0
chr16:30669930|30670120 hsa-miR-4761-3p 0 1 0
chr16:30669930|30670120 hsa-miR-432-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6845-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6732-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6805-5p 1 1 0
chr16:30669930|30670120 hsa-miR-6782-5p 0 1 0
chr16:30669930|30670120 hsa-miR-6821-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6810-5p 1 0 0
chr16:30669930|30670120 hsa-miR-5008-5p 0 1 0
chr16:30669930|30670120 hsa-miR-1226-5p 1 1 0
chr16:30669930|30670120 hsa-miR-3127-5p 1 0 0
chr16:30669930|30670120 hsa-miR-1228-5p 1 0 0
chr16:30669930|30670120 hsa-miR-3667-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6771-5p 1 0 0
chr16:30669930|30670120 hsa-miR-3677-3p 1 0 0
chr16:30669930|30670120 hsa-miR-4667-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6824-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6800-5p 0 1 0
chr16:30669930|30670120 hsa-miR-6769a-3p 0 1 0
chr16:30669930|30670120 hsa-miR-1236-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6743-3p 0 1 0
chr16:30669930|30670120 hsa-miR-493-5p 0 1 0
chr16:30669930|30670120 hsa-miR-4687-5p 0 1 0
chr16:30669930|30670120 hsa-miR-6887-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6886-3p 0 1 0
chr16:30669930|30670120 hsa-miR-5088-3p 0 1 0
chr16:30669930|30670120 hsa-miR-4749-3p 0 1 0
chr16:30669930|30670120 hsa-miR-1233-5p 1 0 0
chr16:30669930|30670120 hsa-miR-4763-3p 1 0 0
chr16:30669930|30670120 hsa-miR-6769b-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6816-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6893-5p 0 1 0
chr16:30669930|30670120 hsa-miR-6775-5p 1 0 0
chr16:30669930|30670120 hsa-miR-1343-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6737-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6743-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6756-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6769a-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6819-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6851-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6774-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6779-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6797-5p 1 0 0
chr16:30669930|30670120 hsa-miR-7111-5p 1 0 0
chr16:30669930|30670120 hsa-miR-3127-3p 0 1 0
chr16:30669930|30670120 hsa-miR-320a-5p 0 1 0
chr16:30669930|30670120 hsa-miR-1915-3p 0 1 0
chr16:30669930|30670120 hsa-miR-328-5p 1 1 0
chr16:30669930|30670120 hsa-miR-4685-5p 1 1 0
chr16:30669930|30670120 hsa-miR-4701-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6794-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6795-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6848-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6858-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6883-5p 0 1 0
chr16:30669930|30670120 hsa-miR-6885-5p 1 0 0
chr16:30669930|30670120 hsa-miR-365a-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6736-5p 1 0 0
chr16:30669930|30670120 hsa-miR-3679-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6785-5p 1 1 0
chr16:30669930|30670120 hsa-miR-6724-5p 1 0 0
chr16:30669930|30670120 hsa-miR-6756-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6837-5p 0 1 0
chr16:30669930|30670120 hsa-miR-6751-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6823-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6744-3p 0 1 0
chr16:30669930|30670120 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:30669930|30670120
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MGLPPQGLTKPEAKVPPPVHLPPKSSCPPRAGGGGAQGRGVPCTYLSPLSHSPK
Nucleotide Sequence CTGGGCCTGCCTCCCCAAGGGCTCACTAAGCCAGAGGCCAAAGTGCCCCCTCCCGTTCACCTACCACCCAAGTCCTCATGCCCTCCGAGGGCTGGGGGAGGAGGGGCTCAAGGAAGGGGGGTTCCATGTACATATTTATCACCCCTTTCACATAGCCCCAAG
CircID chr16:30669930|30670120
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MPSEGWGRRGSRKGGSMYIFITPFT
Nucleotide Sequence ATGCCCTCCGAGGGCTGGGGGAGGAGGGGCTCAAGGAAGGGGGGTTCCATGTACATATTTATCACCCCTTTCACATAG
CircID chr16:30669930|30670120
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MYMEPPFLEPLLPQPSEGMRTWVVGEREGALWPLA
Nucleotide Sequence ATGTACATGGAACCCCCCTTCCTTGAGCCCCTCCTCCCCCAGCCCTCGGAGGGCATGAGGACTTGGGTGGTAGGTGAACGGGAGGGGGCACTTTGGCCTCTGGCTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab