CircRNA Information

General Information
circRNA Basic Information
CircID chr16:30711854|30712026
Strand +
CircType exon
Host Gene ENSG00000080603.15;
Algorism CIRI2;
Sequence TCTGCTCTTCATCCCTGGCAAGCAAGTACTCCACCCCAAAATCATCATCTTCCTCCTCTTCATCTGCTTGGCTCTGTGATTGGGCATCCTCAGACTCTTCAGACTCAGATTCCTCTGATGCTGAACTTCCACTTGTTTCTTCCTCCTCTGAATGTTCATCTTCCTCATCCTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:30711854|30712026 hsa-miR-181c-5p 0 0 1
chr16:30711854|30712026 hsa-miR-181c-3p 0 0 1
chr16:30711854|30712026 hsa-miR-181d-5p 0 0 1
chr16:30711854|30712026 hsa-miR-181d-3p 0 0 1
chr16:30711854|30712026 hsa-miR-608 0 0 1
chr16:30711854|30712026 hsa-miR-627-5p 0 0 1
chr16:30711854|30712026 hsa-miR-627-3p 0 0 1
chr16:30711854|30712026 hsa-miR-543 0 0 1
chr16:30711854|30712026 hsa-miR-924 0 0 1
chr16:30711854|30712026 hsa-miR-1202 0 0 1
chr16:30711854|30712026 hsa-miR-1255a 0 0 1
chr16:30711854|30712026 hsa-miR-1272 0 0 1
chr16:30711854|30712026 hsa-miR-342-5p 0 0 1
chr16:30711854|30712026 hsa-miR-1255b 0 0 1
chr16:30711854|30712026 hsa-miR-181a 0 0 1
chr16:30711854|30712026 hsa-miR-181b 0 0 1
chr16:30711854|30712026 hsa-miR-1185 0 0 1
chr16:30711854|30712026 hsa-miR-184 1 0 0
chr16:30711854|30712026 hsa-miR-765 1 0 0
chr16:30711854|30712026 hsa-miR-3125 1 0 0
chr16:30711854|30712026 hsa-miR-3154 1 0 0
chr16:30711854|30712026 hsa-miR-4271 1 0 0
chr16:30711854|30712026 hsa-miR-3916 1 0 0
chr16:30711854|30712026 hsa-miR-3918 1 0 0
chr16:30711854|30712026 hsa-miR-4476 1 0 0
chr16:30711854|30712026 hsa-miR-4510 1 0 0
chr16:30711854|30712026 hsa-miR-4514 1 0 0
chr16:30711854|30712026 hsa-miR-4516 1 0 0
chr16:30711854|30712026 hsa-miR-4525 1 0 0
chr16:30711854|30712026 hsa-miR-4533 1 0 0
chr16:30711854|30712026 hsa-miR-4537 1 0 0
chr16:30711854|30712026 hsa-miR-3976 1 0 0
chr16:30711854|30712026 hsa-miR-4647 1 0 0
chr16:30711854|30712026 hsa-miR-4651 1 0 0
chr16:30711854|30712026 hsa-miR-4673 1 0 0
chr16:30711854|30712026 hsa-miR-4689 1 0 0
chr16:30711854|30712026 hsa-miR-4739 1 0 0
chr16:30711854|30712026 hsa-miR-4784 1 0 0
chr16:30711854|30712026 hsa-miR-5093 1 0 0
chr16:30711854|30712026 hsa-miR-5572 1 0 0
chr16:30711854|30712026 hsa-miR-6074 1 0 0
chr16:30711854|30712026 hsa-miR-6088 1 0 0
chr16:30711854|30712026 hsa-miR-6127 1 0 0
chr16:30711854|30712026 hsa-miR-6129 1 0 0
chr16:30711854|30712026 hsa-miR-6133 1 0 0
chr16:30711854|30712026 hsa-miR-6165 1 0 0
chr16:30711854|30712026 hsa-miR-6745 1 0 0
chr16:30711854|30712026 hsa-miR-7515 1 0 0
chr16:30711854|30712026 hsa-miR-9500 1 0 0
chr16:30711854|30712026 hsa-miR-12118 1 0 0
chr16:30711854|30712026 hsa-miR-7-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6734-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6765-5p 1 0 0
chr16:30711854|30712026 hsa-miR-7106-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6825-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6894-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6510-5p 1 0 0
chr16:30711854|30712026 hsa-miR-766-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6833-5p 1 0 0
chr16:30711854|30712026 hsa-miR-5187-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6880-5p 1 0 0
chr16:30711854|30712026 hsa-miR-7847-3p 1 0 0
chr16:30711854|30712026 hsa-miR-4695-5p 1 0 0
chr16:30711854|30712026 hsa-miR-4709-3p 1 0 0
chr16:30711854|30712026 hsa-miR-4722-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6730-5p 1 0 0
chr16:30711854|30712026 hsa-miR-7154-3p 1 0 0
chr16:30711854|30712026 hsa-miR-505-5p 1 0 0
chr16:30711854|30712026 hsa-miR-4755-3p 1 0 0
chr16:30711854|30712026 hsa-miR-8069 1 0 0
chr16:30711854|30712026 hsa-miR-3682-3p 1 0 0
chr16:30711854|30712026 hsa-miR-3180-3p 1 0 0
chr16:30711854|30712026 hsa-miR-6796-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6798-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6760-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6782-5p 1 0 0
chr16:30711854|30712026 hsa-miR-877-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6847-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6824-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6895-5p 1 0 0
chr16:30711854|30712026 hsa-miR-7846-3p 1 0 0
chr16:30711854|30712026 hsa-miR-6812-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6893-5p 1 0 0
chr16:30711854|30712026 hsa-miR-3180 1 0 0
chr16:30711854|30712026 hsa-miR-6737-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6756-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6803-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6819-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6842-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6851-5p 1 0 0
chr16:30711854|30712026 hsa-miR-11181-3p 1 0 0
chr16:30711854|30712026 hsa-miR-1249-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6797-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6879-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6780b-5p 1 0 0
chr16:30711854|30712026 hsa-miR-10526-3p 1 0 0
chr16:30711854|30712026 hsa-miR-4649-5p 1 0 0
chr16:30711854|30712026 hsa-miR-4725-3p 1 0 0
chr16:30711854|30712026 hsa-miR-6738-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6794-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6858-5p 1 0 0
chr16:30711854|30712026 hsa-miR-4436b-3p 1 0 0
chr16:30711854|30712026 hsa-miR-6758-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6856-5p 1 0 0
chr16:30711854|30712026 hsa-miR-6855-5p 1 0 0
chr16:30711854|30712026 hsa-miR-3173-3p 1 0 0
chr16:30711854|30712026 hsa-miR-4716-3p 1 0 0
chr16:30711854|30712026 hsa-miR-6837-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:30711854|30712026
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MLGSVIGHPQTLQTQIPLMLNFHLFLPPLNVHLPHP
Nucleotide Sequence CTGCTTGGCTCTGTGATTGGGCATCCTCAGACTCTTCAGACTCAGATTCCTCTGATGCTGAACTTCCACTTGTTTCTTCCTCCTCTGAATGTTCATCTTCCTCATCCT
CircID chr16:30711854|30712026
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence LLFIPGKQVLHPKIIIFLLFICLAL
Nucleotide Sequence CTGCTCTTCATCCCTGGCAAGCAAGTACTCCACCCCAAAATCATCATCTTCCTCCTCTTCATCTGCTTGGCTCTGTGA
CircID chr16:30711854|30712026
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MASKYSTPKSSSSSSSSAWLCDWASSDSSDSDSSDAELPLVSSSSECSSSSSS
Nucleotide Sequence CTGGCAAGCAAGTACTCCACCCCAAAATCATCATCTTCCTCCTCTTCATCTGCTTGGCTCTGTGATTGGGCATCCTCAGACTCTTCAGACTCAGATTCCTCTGATGCTGAACTTCCACTTGTTTCTTCCTCCTCTGAATGTTCATCTTCCTCATCCTCA
CircID chr16:30711854|30712026
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MRKMNIQRRKKQVEVQHQRNLSLKSLRMPNHRAKQMKRRKMMILGWSTCLPGMKSR
Nucleotide Sequence ATGAGGAAGATGAACATTCAGAGGAGGAAGAAACAAGTGGAAGTTCAGCATCAGAGGAATCTGAGTCTGAAGAGTCTGAGGATGCCCAATCACAGAGCCAAGCAGATGAAGAGGAGGAAGATGATGATTTTGGGGTGGAGTACTTGCTTGCCAGGGATGAAGAGCAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab