CircRNA Information

General Information
circRNA Basic Information
CircID chr16:30740342|30740498
Strand -
CircType exon
Host Gene ENSG00000080603.15;
Algorism CIRI2;
Sequence AGATATCCTTTTCCTCTCATTTCTTTTCCCTCGGTTCCTAGACGTTCCTCGGAGCTCTTTGATGCCTCAGACCTTTCCCTTTTATCCCTCTTGCTCAGGTGCTTCCTTTCACAACTTTTTCCAGAGGGCAGGCGTCCTAGCTCCAGTTGCTCCATCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:30740342|30740498 hsa-miR-382-5p 0 0 1
chr16:30740342|30740498 hsa-miR-382-3p 0 0 1
chr16:30740342|30740498 hsa-miR-488-5p 0 0 1
chr16:30740342|30740498 hsa-miR-488-3p 0 0 1
chr16:30740342|30740498 hsa-miR-1299 0 0 1
chr16:30740342|30740498 hsa-miR-1276 0 0 1
chr16:30740342|30740498 hsa-miR-1827 0 0 1
chr16:30740342|30740498 hsa-miR-875-3p 0 0 1
chr16:30740342|30740498 hsa-miR-601 1 0 0
chr16:30740342|30740498 hsa-miR-612 1 0 0
chr16:30740342|30740498 hsa-miR-3132 1 0 0
chr16:30740342|30740498 hsa-miR-3153 0 1 0
chr16:30740342|30740498 hsa-miR-4260 1 0 0
chr16:30740342|30740498 hsa-miR-3612 1 0 0
chr16:30740342|30740498 hsa-miR-4476 1 0 0
chr16:30740342|30740498 hsa-miR-4739 1 0 0
chr16:30740342|30740498 hsa-miR-5194 1 0 0
chr16:30740342|30740498 hsa-miR-6090 1 0 0
chr16:30740342|30740498 hsa-miR-6124 1 0 0
chr16:30740342|30740498 hsa-miR-6127 1 0 0
chr16:30740342|30740498 hsa-miR-6133 1 0 0
chr16:30740342|30740498 hsa-miR-6165 1 0 0
chr16:30740342|30740498 hsa-miR-7706 1 0 0
chr16:30740342|30740498 hsa-miR-7974 1 0 0
chr16:30740342|30740498 hsa-miR-8078 1 0 0
chr16:30740342|30740498 hsa-miR-8082 1 0 0
chr16:30740342|30740498 hsa-miR-12115 1 0 0
chr16:30740342|30740498 hsa-miR-12119 1 0 0
chr16:30740342|30740498 hsa-miR-6734-5p 0 1 0
chr16:30740342|30740498 hsa-miR-1247-3p 1 0 0
chr16:30740342|30740498 hsa-miR-6809-5p 1 0 0
chr16:30740342|30740498 hsa-miR-671-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6873-5p 0 1 0
chr16:30740342|30740498 hsa-miR-4695-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6730-5p 0 1 0
chr16:30740342|30740498 hsa-miR-3928-3p 0 1 0
chr16:30740342|30740498 hsa-miR-197-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6798-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6881-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6874-5p 0 1 0
chr16:30740342|30740498 hsa-miR-6850-5p 1 0 0
chr16:30740342|30740498 hsa-miR-4732-5p 1 0 0
chr16:30740342|30740498 hsa-miR-518c-5p 1 0 0
chr16:30740342|30740498 hsa-miR-500a-3p 1 0 0
chr16:30740342|30740498 hsa-miR-1249-5p 0 1 0
chr16:30740342|30740498 hsa-miR-6788-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6797-5p 1 0 0
chr16:30740342|30740498 hsa-miR-5189-5p 0 1 0
chr16:30740342|30740498 hsa-miR-5196-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6780b-5p 1 0 0
chr16:30740342|30740498 hsa-miR-10526-3p 1 0 0
chr16:30740342|30740498 hsa-miR-4649-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6738-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6794-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6758-5p 0 1 0
chr16:30740342|30740498 hsa-miR-4646-5p 1 0 0
chr16:30740342|30740498 hsa-miR-6891-5p 1 0 0
chr16:30740342|30740498 hsa-miR-502-3p 1 0 0
chr16:30740342|30740498 hsa-miR-3914 0 1 0
chr16:30740342|30740498 hsa-miR-498-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:30740342|30740498
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MMPQTFPFYPSCSGASFHNFFQRAGVLAPVAPS
Nucleotide Sequence TTGATGCCTCAGACCTTTCCCTTTTATCCCTCTTGCTCAGGTGCTTCCTTTCACAACTTTTTCCAGAGGGCAGGCGTCCTAGCTCCAGTTGCTCCATCC
CircID chr16:30740342|30740498
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MEQLELGRLPSGKSCERKHLSKRDKRERSEASKSSEERLGTEGKEMRGKGY
Nucleotide Sequence ATGGAGCAACTGGAGCTAGGACGCCTGCCCTCTGGAAAAAGTTGTGAAAGGAAGCACCTGAGCAAGAGGGATAAAAGGGAAAGGTCTGAGGCATCAAAGAGCTCCGAGGAACGTCTAGGAACCGAGGGAAAAGAAATGAGAGGAAAAGGATAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab