CircRNA Information

General Information
circRNA Basic Information
CircID chr16:30779781|30779987
Strand -
CircType exon
Host Gene ENSG00000102870.5;
Algorism CIRI2;
Sequence CCCTCTCTTGAGACGTGACTCCTGACGGGCCCCACAGCTGGCATCTCAGTCCTCTTACTCCAGGACAGCGCATTACTGGGGTTGGCAAGCACTTCCTTTCTGACCCAGCGCTGAGCAGAGTCCTCTCCTTTTGAAGGGGTCTCCAGGATTAGGGAGTGGGAGTCTTGTTACAGATGTTTCATTCAAGAGTTTTCTGTCTTCCACCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:30779781|30779987 hsa-miR-143-5p 0 0 1
chr16:30779781|30779987 hsa-miR-143-3p 0 0 1
chr16:30779781|30779987 hsa-miR-302a-5p 0 0 1
chr16:30779781|30779987 hsa-miR-302a-3p 0 0 1
chr16:30779781|30779987 hsa-miR-302b-5p 0 0 1
chr16:30779781|30779987 hsa-miR-302b-3p 0 0 1
chr16:30779781|30779987 hsa-miR-302c-5p 0 0 1
chr16:30779781|30779987 hsa-miR-302c-3p 0 0 1
chr16:30779781|30779987 hsa-miR-302d-5p 0 0 1
chr16:30779781|30779987 hsa-miR-302d-3p 0 0 1
chr16:30779781|30779987 hsa-miR-372-5p 0 0 1
chr16:30779781|30779987 hsa-miR-372-3p 0 0 1
chr16:30779781|30779987 hsa-miR-373-5p 0 0 1
chr16:30779781|30779987 hsa-miR-373-3p 0 0 1
chr16:30779781|30779987 hsa-miR-335-5p 0 0 1
chr16:30779781|30779987 hsa-miR-335-3p 0 0 1
chr16:30779781|30779987 hsa-miR-494-5p 0 0 1
chr16:30779781|30779987 hsa-miR-494-3p 0 0 1
chr16:30779781|30779987 hsa-miR-520e-5p 0 0 1
chr16:30779781|30779987 hsa-miR-520e-3p 0 0 1
chr16:30779781|30779987 hsa-miR-520f-5p 0 0 1
chr16:30779781|30779987 hsa-miR-520f-3p 0 0 1
chr16:30779781|30779987 hsa-miR-520b-5p 0 0 1
chr16:30779781|30779987 hsa-miR-520b-3p 0 0 1
chr16:30779781|30779987 hsa-miR-636 0 0 1
chr16:30779781|30779987 hsa-miR-1202 1 0 1
chr16:30779781|30779987 hsa-miR-302e 0 0 1
chr16:30779781|30779987 hsa-miR-513c-5p 0 0 1
chr16:30779781|30779987 hsa-miR-513c-3p 0 0 1
chr16:30779781|30779987 hsa-miR-491-5p 0 0 1
chr16:30779781|30779987 hsa-miR-532-3p 0 0 1
chr16:30779781|30779987 hsa-miR-767-3p 0 0 1
chr16:30779781|30779987 hsa-miR-520d-3p 0 0 1
chr16:30779781|30779987 hsa-miR-520a-3p 0 0 1
chr16:30779781|30779987 hsa-miR-520c-3p 0 0 1
chr16:30779781|30779987 hsa-miR-7 0 0 1
chr16:30779781|30779987 hsa-miR-500 0 0 1
chr16:30779781|30779987 hsa-miR-194 0 0 1
chr16:30779781|30779987 hsa-miR-760 1 0 0
chr16:30779781|30779987 hsa-miR-1269a 1 0 0
chr16:30779781|30779987 hsa-miR-3131 1 0 0
chr16:30779781|30779987 hsa-miR-4463 1 0 0
chr16:30779781|30779987 hsa-miR-4513 1 0 0
chr16:30779781|30779987 hsa-miR-1269b 1 0 0
chr16:30779781|30779987 hsa-miR-3972 1 0 0
chr16:30779781|30779987 hsa-miR-4656 1 0 0
chr16:30779781|30779987 hsa-miR-4741 1 0 0
chr16:30779781|30779987 hsa-miR-6088 1 0 0
chr16:30779781|30779987 hsa-miR-7974 1 0 0
chr16:30779781|30779987 hsa-miR-6089 1 0 0
chr16:30779781|30779987 hsa-miR-6880-5p 1 0 0
chr16:30779781|30779987 hsa-miR-4722-5p 1 0 0
chr16:30779781|30779987 hsa-miR-7154-3p 1 0 0
chr16:30779781|30779987 hsa-miR-432-5p 1 0 0
chr16:30779781|30779987 hsa-miR-3190-3p 1 0 0
chr16:30779781|30779987 hsa-miR-6786-5p 1 0 0
chr16:30779781|30779987 hsa-miR-6852-5p 1 0 0
chr16:30779781|30779987 hsa-miR-4786-3p 1 0 0
chr16:30779781|30779987 hsa-miR-3691-5p 1 0 0
chr16:30779781|30779987 hsa-miR-1233-5p 1 0 0
chr16:30779781|30779987 hsa-miR-6778-5p 1 0 0
chr16:30779781|30779987 hsa-miR-3085-5p 1 0 0
chr16:30779781|30779987 hsa-miR-6766-5p 1 0 0
chr16:30779781|30779987 hsa-miR-6724-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:30779781|30779987
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MTGPTAGISVLLLQDSALLGLASTSFLTQR
Nucleotide Sequence CTGACGGGCCCCACAGCTGGCATCTCAGTCCTCTTACTCCAGGACAGCGCATTACTGGGGTTGGCAAGCACTTCCTTTCTGACCCAGCGCTGA
CircID chr16:30779781|30779987
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MKGSPGLGSGSLVTDVSFKSFLSST
Nucleotide Sequence TTGAAGGGGTCTCCAGGATTAGGGAGTGGGAGTCTTGTTACAGATGTTTCATTCAAGAGTTTTCTGTCTTCCACC
CircID chr16:30779781|30779987
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MVEDRKLLNETSVTRLPLPNPGDPFKRRGLCSALGQKGSACQPQ
Nucleotide Sequence ATGGTGGAAGACAGAAAACTCTTGAATGAAACATCTGTAACAAGACTCCCACTCCCTAATCCTGGAGACCCCTTCAAAAGGAGAGGACTCTGCTCAGCGCTGGGTCAGAAAGGAAGTGCTTGCCAACCCCAGTAA
CircID chr16:30779781|30779987
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence METPSKGEDSAQRWVRKEVLANPSNALSWSKRTEMPAVGPVRSHVSRE
Nucleotide Sequence CTGGAGACCCCTTCAAAAGGAGAGGACTCTGCTCAGCGCTGGGTCAGAAAGGAAGTGCTTGCCAACCCCAGTAATGCGCTGTCCTGGAGTAAGAGGACTGAGATGCCAGCTGTGGGGCCCGTCAGGAGTCACGTCTCAAGAGAG
CircID chr16:30779781|30779987
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MLSAGSERKCLPTPVMRCPGVRGLRCQLWGPSGVTSQER
Nucleotide Sequence CTGCTCAGCGCTGGGTCAGAAAGGAAGTGCTTGCCAACCCCAGTAATGCGCTGTCCTGGAGTAAGAGGACTGAGATGCCAGCTGTGGGGCCCGTCAGGAGTCACGTCTCAAGAGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab