CircRNA Information

General Information
circRNA Basic Information
CircID chr16:30953433|30953565
Strand -
CircType exon
Host Gene ENSG00000261487.1;
Algorism CIRI2;
Sequence CTTTCTCTTCCTTGCTGAAGTTGTCCTGGTTGGTTGGGTCAAGTTTGTGCCCATTGGGGCTCCCTTGGACACACCGACCCCCATGGTGCCCACATCCCGGGTGCCCGGGACTCTGGCACCAGTGGCTACCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:30953433|30953565 hsa-let-7b-5p 0 0 1
chr16:30953433|30953565 hsa-let-7b-3p 0 0 1
chr16:30953433|30953565 hsa-let-7c-5p 0 0 1
chr16:30953433|30953565 hsa-let-7c-3p 0 0 1
chr16:30953433|30953565 hsa-let-7d-5p 0 0 1
chr16:30953433|30953565 hsa-let-7d-3p 0 0 1
chr16:30953433|30953565 hsa-let-7e-5p 0 0 1
chr16:30953433|30953565 hsa-let-7e-3p 0 0 1
chr16:30953433|30953565 hsa-miR-98-5p 0 0 1
chr16:30953433|30953565 hsa-miR-98-3p 0 0 1
chr16:30953433|30953565 hsa-let-7g-5p 0 0 1
chr16:30953433|30953565 hsa-let-7g-3p 0 0 1
chr16:30953433|30953565 hsa-let-7i-5p 0 0 1
chr16:30953433|30953565 hsa-let-7i-3p 0 0 1
chr16:30953433|30953565 hsa-miR-545-5p 0 0 1
chr16:30953433|30953565 hsa-miR-545-3p 0 0 1
chr16:30953433|30953565 hsa-miR-1225-3p 0 0 1
chr16:30953433|30953565 hsa-miR-767-5p 0 1 1
chr16:30953433|30953565 hsa-miR-299-3p 0 0 1
chr16:30953433|30953565 hsa-miR-886-5p 0 0 1
chr16:30953433|30953565 hsa-let-7a 0 0 1
chr16:30953433|30953565 hsa-let-7f 0 0 1
chr16:30953433|30953565 hsa-miR-549 0 0 1
chr16:30953433|30953565 hsa-miR-548q 0 1 0
chr16:30953433|30953565 hsa-miR-3650 0 1 0
chr16:30953433|30953565 hsa-miR-4449 0 1 0
chr16:30953433|30953565 hsa-miR-6510-5p 0 1 0
chr16:30953433|30953565 hsa-miR-6827-5p 0 1 0
chr16:30953433|30953565 hsa-miR-6753-5p 1 0 0
chr16:30953433|30953565 hsa-miR-5000-3p 0 1 0
chr16:30953433|30953565 hsa-miR-1180-5p 1 0 0
chr16:30953433|30953565 hsa-miR-5699-5p 0 1 0
chr16:30953433|30953565 hsa-miR-6752-5p 1 0 0
chr16:30953433|30953565 hsa-miR-6803-5p 1 0 0
chr16:30953433|30953565 hsa-miR-6851-5p 0 1 0
chr16:30953433|30953565 hsa-miR-6751-5p 0 1 0
chr16:30953433|30953565 hsa-miR-1915-3p 1 0 0
chr16:30953433|30953565 hsa-miR-4685-5p 1 0 0
chr16:30953433|30953565 hsa-miR-3085-5p 0 1 0
chr16:30953433|30953565 hsa-miR-6837-5p 1 0 0
chr16:30953433|30953565 hsa-miR-9851-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:30953433|30953565
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MGQVCAHWGSLGHTDPHGAHIPGARDSGTSGYL
Nucleotide Sequence TTGGGTCAAGTTTGTGCCCATTGGGGCTCCCTTGGACACACCGACCCCCATGGTGCCCACATCCCGGGTGCCCGGGACTCTGGCACCAGTGGCTACCTC
CircID chr16:30953433|30953565
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MVGWVKFVPIGAPLDTPTPMVPTSRVPGTLAPVATS
Nucleotide Sequence CTGGTTGGTTGGGTCAAGTTTGTGCCCATTGGGGCTCCCTTGGACACACCGACCCCCATGGTGCCCACATCCCGGGTGCCCGGGACTCTGGCACCAGTGGCTACCTCC
CircID chr16:30953433|30953565
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MLKLSWLVGSSLCPLGLPWTHRPPWCPHPGCPGLWHQWLP
Nucleotide Sequence TTGCTGAAGTTGTCCTGGTTGGTTGGGTCAAGTTTGTGCCCATTGGGGCTCCCTTGGACACACCGACCCCCATGGTGCCCACATCCCGGGTGCCCGGGACTCTGGCACCAGTGGCTACCT
CircID chr16:30953433|30953565
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MGVGVSKGAPMGTNLTQPTRTTSARKRK
Nucleotide Sequence ATGGGGGTCGGTGTGTCCAAGGGAGCCCCAATGGGCACAAACTTGACCCAACCAACCAGGACAACTTCAGCAAGGAAGAGAAAG
CircID chr16:30953433|30953565
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MVPESRAPGMWAPWGSVCPREPQWAQT
Nucleotide Sequence CTGGTGCCAGAGTCCCGGGCACCCGGGATGTGGGCACCATGGGGGTCGGTGTGTCCAAGGGAGCCCCAATGGGCACAAACTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab