CircRNA Information

General Information
circRNA Basic Information
CircID chr16:30984338|30984476
Strand -
CircType exon
Host Gene ENSG00000099381.15;
Algorism CIRI2;
Sequence ACAGTCCTCTTGCTTTGTGTTAATGGGGACTTCCCCTTACGCCCTGCGTGTACCCCTCCCCAGTTTAGGGGTCTCTGGGGCAGTGGCCATGTTCTCCCCCTGGGGGGGCTCTGCACCCCCAGTCCTGGGGACTCCGTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:30984338|30984476 hsa-miR-585-5p 0 0 1
chr16:30984338|30984476 hsa-miR-585-3p 0 0 1
chr16:30984338|30984476 hsa-miR-588 0 0 1
chr16:30984338|30984476 hsa-miR-637 0 1 1
chr16:30984338|30984476 hsa-miR-939-5p 0 0 1
chr16:30984338|30984476 hsa-miR-939-3p 0 0 1
chr16:30984338|30984476 hsa-miR-548g-5p 0 0 1
chr16:30984338|30984476 hsa-miR-548g-3p 0 0 1
chr16:30984338|30984476 hsa-miR-1225-3p 1 0 1
chr16:30984338|30984476 hsa-miR-1289 0 0 1
chr16:30984338|30984476 hsa-miR-330-3p 0 0 1
chr16:30984338|30984476 hsa-miR-361-3p 0 1 1
chr16:30984338|30984476 hsa-miR-324-3p 1 1 1
chr16:30984338|30984476 hsa-miR-342-5p 0 0 1
chr16:30984338|30984476 hsa-miR-3175 0 1 0
chr16:30984338|30984476 hsa-miR-4252 0 1 0
chr16:30984338|30984476 hsa-miR-4463 1 1 0
chr16:30984338|30984476 hsa-miR-4706 1 0 0
chr16:30984338|30984476 hsa-miR-5698 0 1 0
chr16:30984338|30984476 hsa-miR-8089 1 1 0
chr16:30984338|30984476 hsa-miR-6840-3p 0 1 0
chr16:30984338|30984476 hsa-miR-6825-5p 0 1 0
chr16:30984338|30984476 hsa-miR-6799-5p 1 0 0
chr16:30984338|30984476 hsa-miR-4722-5p 0 1 0
chr16:30984338|30984476 hsa-miR-6783-5p 0 1 0
chr16:30984338|30984476 hsa-miR-6798-5p 0 1 0
chr16:30984338|30984476 hsa-miR-615-5p 0 1 0
chr16:30984338|30984476 hsa-miR-149-3p 1 1 0
chr16:30984338|30984476 hsa-miR-6824-5p 1 0 0
chr16:30984338|30984476 hsa-miR-942-3p 0 1 0
chr16:30984338|30984476 hsa-miR-4763-3p 1 0 0
chr16:30984338|30984476 hsa-miR-6816-5p 1 0 0
chr16:30984338|30984476 hsa-miR-6775-5p 1 0 0
chr16:30984338|30984476 hsa-miR-6752-5p 1 1 0
chr16:30984338|30984476 hsa-miR-6756-5p 1 0 0
chr16:30984338|30984476 hsa-miR-6803-5p 1 1 0
chr16:30984338|30984476 hsa-miR-7110-5p 0 1 0
chr16:30984338|30984476 hsa-miR-7111-5p 0 1 0
chr16:30984338|30984476 hsa-miR-4728-5p 1 1 0
chr16:30984338|30984476 hsa-miR-5196-5p 1 0 0
chr16:30984338|30984476 hsa-miR-6836-5p 0 1 0
chr16:30984338|30984476 hsa-miR-328-5p 1 0 0
chr16:30984338|30984476 hsa-miR-4685-5p 0 1 0
chr16:30984338|30984476 hsa-miR-4725-3p 0 1 0
chr16:30984338|30984476 hsa-miR-6738-5p 1 1 0
chr16:30984338|30984476 hsa-miR-6858-5p 1 0 0
chr16:30984338|30984476 hsa-miR-6885-5p 1 0 0
chr16:30984338|30984476 hsa-miR-1266-5p 0 1 0
chr16:30984338|30984476 hsa-miR-3198 0 1 0
chr16:30984338|30984476 hsa-miR-6731-5p 0 1 0
chr16:30984338|30984476 hsa-miR-4664-5p 0 1 0
chr16:30984338|30984476 hsa-miR-1914-3p 1 1 0
chr16:30984338|30984476 hsa-miR-4700-5p 0 1 0
chr16:30984338|30984476 hsa-miR-4716-3p 0 1 0
chr16:30984338|30984476 hsa-miR-6785-5p 1 1 0
chr16:30984338|30984476 hsa-miR-4701-5p 0 1 0
chr16:30984338|30984476 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:30984338|30984476
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MLCVNGDFPLRPACTPPQFRGLWGSGHVLPLGGLCTPSPGDSV
Nucleotide Sequence TTGCTTTGTGTTAATGGGGACTTCCCCTTACGCCCTGCGTGTACCCCTCCCCAGTTTAGGGGTCTCTGGGGCAGTGGCCATGTTCTCCCCCTGGGGGGGCTCTGCACCCCCAGTCCTGGGGACTCCGTG
CircID chr16:30984338|30984476
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MGTSPYALRVPLPSLGVSGAVAMFSPWGGSAPPVLGTPC
Nucleotide Sequence ATGGGGACTTCCCCTTACGCCCTGCGTGTACCCCTCCCCAGTTTAGGGGTCTCTGGGGCAGTGGCCATGTTCTCCCCCTGGGGGGGCTCTGCACCCCCAGTCCTGGGGACTCCGTGC
CircID chr16:30984338|30984476
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MGVQSPPRGRTWPLPQRPLNWGGVHAGRKGKSPLTQSKRT
Nucleotide Sequence CTGGGGGTGCAGAGCCCCCCCAGGGGGAGAACATGGCCACTGCCCCAGAGACCCCTAAACTGGGGAGGGGTACACGCAGGGCGTAAGGGGAAGTCCCCATTAACACAAAGCAAGAGGACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab