CircRNA Information

General Information
circRNA Basic Information
CircID chr16:31060888|31061173
Strand -
CircType exon
Host Gene ENSG00000232748.3;
Algorism CIRI2;
Sequence AGTCACGTCTCAGCTTCTGCCAGCCTCCACTGTCCCAGCTCTCTTAGCTGGCCGACAGGGGAGCTAGTTGCTGAGGGGTAGGGATCTGGAGTCTAAAGAGCAGAGCCAGGCAAAAGGAGGTACAGGAAGCCCCCGATGGGGGCTGGGCTCCCGGAGTGTGGTGCTGGGGGGTCATGGGCTTCAGGCCGGCCCCTCTTCAGGCATTCCTAGCAAAGCCACCAGGGGCTCCAGGGGTGTGGGGGTCCCCATGGGCACAGGGTGGGTGCGTTCATGCTTGCGCAAGTCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:31060888|31061173 hsa-miR-29a-5p 0 0 1
chr16:31060888|31061173 hsa-miR-29a-3p 0 0 1
chr16:31060888|31061173 hsa-miR-10a-5p 0 0 1
chr16:31060888|31061173 hsa-miR-10a-3p 0 0 1
chr16:31060888|31061173 hsa-miR-10b-5p 0 0 1
chr16:31060888|31061173 hsa-miR-10b-3p 0 0 1
chr16:31060888|31061173 hsa-miR-149-5p 0 0 1
chr16:31060888|31061173 hsa-miR-149-3p 0 0 1
chr16:31060888|31061173 hsa-miR-29c-5p 0 0 1
chr16:31060888|31061173 hsa-miR-29c-3p 0 0 1
chr16:31060888|31061173 hsa-miR-545-5p 0 0 1
chr16:31060888|31061173 hsa-miR-545-3p 0 0 1
chr16:31060888|31061173 hsa-miR-650 0 0 1
chr16:31060888|31061173 hsa-miR-661 0 0 1
chr16:31060888|31061173 hsa-miR-298 0 1 1
chr16:31060888|31061173 hsa-miR-760 0 1 1
chr16:31060888|31061173 hsa-miR-1234-3p 0 0 1
chr16:31060888|31061173 hsa-miR-1234 0 0 1
chr16:31060888|31061173 hsa-miR-486-5p 1 0 1
chr16:31060888|31061173 hsa-miR-139-3p 0 0 1
chr16:31060888|31061173 hsa-miR-1225-3p 0 1 1
chr16:31060888|31061173 hsa-miR-485-5p 0 1 1
chr16:31060888|31061173 hsa-miR-339-5p 0 1 1
chr16:31060888|31061173 hsa-miR-423-5p 0 0 1
chr16:31060888|31061173 hsa-miR-508-5p 0 1 1
chr16:31060888|31061173 hsa-miR-361-3p 0 0 1
chr16:31060888|31061173 hsa-miR-331-3p 0 1 1
chr16:31060888|31061173 hsa-miR-767-3p 0 0 1
chr16:31060888|31061173 hsa-miR-1302 0 0 1
chr16:31060888|31061173 hsa-miR-516a-3p 0 0 1
chr16:31060888|31061173 hsa-miR-1254 0 0 1
chr16:31060888|31061173 hsa-miR-1201 0 0 1
chr16:31060888|31061173 hsa-miR-29b 0 0 1
chr16:31060888|31061173 hsa-miR-151-3p 0 0 1
chr16:31060888|31061173 hsa-miR-634 0 1 0
chr16:31060888|31061173 hsa-miR-637 1 0 0
chr16:31060888|31061173 hsa-miR-892b 0 1 0
chr16:31060888|31061173 hsa-miR-1200 1 0 0
chr16:31060888|31061173 hsa-miR-4298 0 1 0
chr16:31060888|31061173 hsa-miR-4308 0 1 0
chr16:31060888|31061173 hsa-miR-4254 0 1 0
chr16:31060888|31061173 hsa-miR-3943 1 1 0
chr16:31060888|31061173 hsa-miR-4456 0 1 0
chr16:31060888|31061173 hsa-miR-4641 0 1 0
chr16:31060888|31061173 hsa-miR-7702 1 1 0
chr16:31060888|31061173 hsa-miR-8057 0 1 0
chr16:31060888|31061173 hsa-miR-12115 0 1 0
chr16:31060888|31061173 hsa-miR-6836-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6822-3p 1 0 0
chr16:31060888|31061173 hsa-miR-766-3p 1 0 0
chr16:31060888|31061173 hsa-miR-7847-3p 0 1 0
chr16:31060888|31061173 hsa-miR-4709-3p 0 1 0
chr16:31060888|31061173 hsa-miR-6875-3p 1 0 0
chr16:31060888|31061173 hsa-miR-770-5p 1 1 0
chr16:31060888|31061173 hsa-miR-191-3p 1 0 0
chr16:31060888|31061173 hsa-let-7i-3p 1 1 0
chr16:31060888|31061173 hsa-miR-6849-3p 1 0 0
chr16:31060888|31061173 hsa-miR-4633-5p 1 0 0
chr16:31060888|31061173 hsa-miR-6728-3p 1 1 0
chr16:31060888|31061173 hsa-miR-939-3p 1 0 0
chr16:31060888|31061173 hsa-miR-1226-5p 1 0 0
chr16:31060888|31061173 hsa-miR-5001-3p 1 0 0
chr16:31060888|31061173 hsa-miR-4650-3p 0 1 0
chr16:31060888|31061173 hsa-miR-6889-3p 1 0 0
chr16:31060888|31061173 hsa-miR-660-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6828-3p 0 1 0
chr16:31060888|31061173 hsa-miR-1468-5p 1 0 0
chr16:31060888|31061173 hsa-miR-6868-5p 0 1 0
chr16:31060888|31061173 hsa-miR-3160-5p 1 0 0
chr16:31060888|31061173 hsa-miR-1914-5p 1 1 0
chr16:31060888|31061173 hsa-miR-5088-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6738-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6859-3p 0 1 0
chr16:31060888|31061173 hsa-miR-7152-5p 1 1 0
chr16:31060888|31061173 hsa-miR-3620-3p 1 0 0
chr16:31060888|31061173 hsa-miR-3162-3p 1 1 0
chr16:31060888|31061173 hsa-miR-4797-3p 0 1 0
chr16:31060888|31061173 hsa-miR-7107-5p 0 1 0
chr16:31060888|31061173 hsa-miR-6774-5p 1 0 0
chr16:31060888|31061173 hsa-miR-6846-5p 0 1 0
chr16:31060888|31061173 hsa-miR-6848-5p 0 1 0
chr16:31060888|31061173 hsa-miR-6858-5p 1 1 0
chr16:31060888|31061173 hsa-miR-939-5p 0 1 0
chr16:31060888|31061173 hsa-miR-6511a-5p 1 1 0
chr16:31060888|31061173 hsa-miR-1271-3p 1 0 0
chr16:31060888|31061173 hsa-miR-1914-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6791-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6791-5p 1 0 0
chr16:31060888|31061173 hsa-miR-9851-5p 0 1 0
chr16:31060888|31061173 hsa-miR-6805-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6829-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6529-3p 0 1 0
chr16:31060888|31061173 hsa-miR-6751-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6884-5p 0 1 0
chr16:31060888|31061173 hsa-miR-6783-3p 1 0 0
chr16:31060888|31061173 hsa-miR-33b-3p 1 0 0
chr16:31060888|31061173 hsa-miR-519e-3p 1 0 0
chr16:31060888|31061173 hsa-miR-6806-3p 0 1 0
chr16:31060888|31061173 hsa-miR-6874-3p 1 0 0
chr16:31060888|31061173 hsa-miR-4724-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:31060888|31061173
ORF Type ORF1
Protein Length 73
Nucleotide Length 219
Protein Sequence MLRGRDLESKEQSQAKGGTGSPRWGLGSRSVVLGGHGLQAGPSSGIPSKATRGSRGVGVPMGTGWVRSCLRKS
Nucleotide Sequence TTGCTGAGGGGTAGGGATCTGGAGTCTAAAGAGCAGAGCCAGGCAAAAGGAGGTACAGGAAGCCCCCGATGGGGGCTGGGCTCCCGGAGTGTGGTGCTGGGGGGTCATGGGCTTCAGGCCGGCCCCTCTTCAGGCATTCCTAGCAAAGCCACCAGGGGCTCCAGGGGTGTGGGGGTCCCCATGGGCACAGGGTGGGTGCGTTCATGCTTGCGCAAGTCG
CircID chr16:31060888|31061173
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MGFRPAPLQAFLAKPPGAPGVWGSPWAQGGCVHACAS
Nucleotide Sequence ATGGGCTTCAGGCCGGCCCCTCTTCAGGCATTCCTAGCAAAGCCACCAGGGGCTCCAGGGGTGTGGGGGTCCCCATGGGCACAGGGTGGGTGCGTTCATGCTTGCGCAAGT
CircID chr16:31060888|31061173
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MKPMTPQHHTPGAQPPSGASCTSFCLALLFRLQIPTPQQLAPLSAS
Nucleotide Sequence CTGAAGCCCATGACCCCCCAGCACCACACTCCGGGAGCCCAGCCCCCATCGGGGGCTTCCTGTACCTCCTTTTGCCTGGCTCTGCTCTTTAGACTCCAGATCCCTACCCCTCAGCAACTAGCTCCCCTGTCGGCCAGCTAA
CircID chr16:31060888|31061173
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MRKHERTHPVPMGTPTPLEPLVALLGMPEEGPA
Nucleotide Sequence TTGCGCAAGCATGAACGCACCCACCCTGTGCCCATGGGGACCCCCACACCCCTGGAGCCCCTGGTGGCTTTGCTAGGAATGCCTGAAGAGGGGCCGGCCTGA
CircID chr16:31060888|31061173
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MKRGRPEAHDPPAPHSGSPAPIGGFLYLLLPGSAL
Nucleotide Sequence CTGAAGAGGGGCCGGCCTGAAGCCCATGACCCCCCAGCACCACACTCCGGGAGCCCAGCCCCCATCGGGGGCTTCCTGTACCTCCTTTTGCCTGGCTCTGCTCTTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab