CircRNA Information

General Information
circRNA Basic Information
CircID chr16:31189437|31189563
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTAAACTCTTGAGATTTGTACTCTATAGTAACTTTTAGTTTTATCTTTCAATATTGGAGTGAGAGACAGTTTTCTTTAATGGAGGTTTACATGTGAGGTAGGAAGAAGTAACTGGGAAGAGGGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:31189437|31189563 hsa-miR-30a-5p 0 0 1
chr16:31189437|31189563 hsa-miR-30a-3p 0 0 1
chr16:31189437|31189563 hsa-miR-30d-5p 0 0 1
chr16:31189437|31189563 hsa-miR-30d-3p 0 0 1
chr16:31189437|31189563 hsa-miR-216a-5p 0 0 1
chr16:31189437|31189563 hsa-miR-216a-3p 0 0 1
chr16:31189437|31189563 hsa-miR-30b-5p 0 0 1
chr16:31189437|31189563 hsa-miR-30b-3p 0 0 1
chr16:31189437|31189563 hsa-miR-136-5p 0 0 1
chr16:31189437|31189563 hsa-miR-136-3p 0 0 1
chr16:31189437|31189563 hsa-miR-186-5p 0 0 1
chr16:31189437|31189563 hsa-miR-186-3p 0 0 1
chr16:31189437|31189563 hsa-miR-30e-5p 0 0 1
chr16:31189437|31189563 hsa-miR-30e-3p 0 0 1
chr16:31189437|31189563 hsa-miR-335-5p 0 0 1
chr16:31189437|31189563 hsa-miR-335-3p 0 0 1
chr16:31189437|31189563 hsa-miR-488-5p 0 0 1
chr16:31189437|31189563 hsa-miR-488-3p 0 0 1
chr16:31189437|31189563 hsa-miR-577 0 0 1
chr16:31189437|31189563 hsa-miR-593-5p 0 0 1
chr16:31189437|31189563 hsa-miR-593-3p 0 0 1
chr16:31189437|31189563 hsa-miR-935 0 0 1
chr16:31189437|31189563 hsa-miR-1236-5p 0 0 1
chr16:31189437|31189563 hsa-miR-1236-3p 0 0 1
chr16:31189437|31189563 hsa-miR-548e-5p 0 0 1
chr16:31189437|31189563 hsa-miR-548e-3p 0 0 1
chr16:31189437|31189563 hsa-miR-548g-5p 0 0 1
chr16:31189437|31189563 hsa-miR-548g-3p 0 0 1
chr16:31189437|31189563 hsa-miR-548n 0 0 1
chr16:31189437|31189563 hsa-miR-513c-5p 0 0 1
chr16:31189437|31189563 hsa-miR-513c-3p 0 0 1
chr16:31189437|31189563 hsa-miR-885-5p 0 0 1
chr16:31189437|31189563 hsa-miR-483-3p 0 0 1
chr16:31189437|31189563 hsa-miR-548a-3p 0 0 1
chr16:31189437|31189563 hsa-miR-30c 0 0 1
chr16:31189437|31189563 hsa-miR-548f 0 0 1
chr16:31189437|31189563 hsa-miR-877-3p 1 0 0
chr16:31189437|31189563 hsa-miR-7111-3p 1 0 0
chr16:31189437|31189563 hsa-miR-6776-3p 1 0 0
chr16:31189437|31189563 hsa-miR-6886-3p 1 0 0
chr16:31189437|31189563 hsa-miR-5088-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:31189437|31189563
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MYSIVTFSFIFQYWSERQFSLMEVYM
Nucleotide Sequence TTGTACTCTATAGTAACTTTTAGTTTTATCTTTCAATATTGGAGTGAGAGACAGTTTTCTTTAATGGAGGTTTACATGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab