CircRNA Information

General Information
circRNA Basic Information
CircID chr16:3486233|3486498
Strand +
CircType exon
Host Gene ENSG00000122390.16;
Algorism CIRI2;
Sequence CCTGAGAGCCCGTGGCTGGGCAGCTCTGGAGGCGGAAGGACACAGGTCCCTGAGGCCCCGTCTGCCCAGGGTTGTTCCTCCCTCTCCCTCCTCCTCAGGCTGGGGCAGGGTGGCGCCGCTAGGACCCTCTGCCATGGCTTTGTGACACTGCAGCTATGCTGGGCGGGACTCCGCCCCCCACCCCACCCCTGCATCGGAGGGCAGGGCAGGCAGCAAGCAGCATTTGGAATGCAGGGTGGAGAGGATGCTAGAAGTATGTGATGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:3486233|3486498 hsa-miR-22-5p 0 0 1
chr16:3486233|3486498 hsa-miR-22-3p 0 0 1
chr16:3486233|3486498 hsa-miR-492 0 0 1
chr16:3486233|3486498 hsa-miR-558 0 0 1
chr16:3486233|3486498 hsa-miR-597-5p 0 0 1
chr16:3486233|3486498 hsa-miR-597-3p 0 0 1
chr16:3486233|3486498 hsa-miR-608 0 1 1
chr16:3486233|3486498 hsa-miR-612 0 1 1
chr16:3486233|3486498 hsa-miR-765 0 1 1
chr16:3486233|3486498 hsa-miR-874-5p 0 0 1
chr16:3486233|3486498 hsa-miR-874-3p 0 0 1
chr16:3486233|3486498 hsa-miR-1266-5p 0 0 1
chr16:3486233|3486498 hsa-miR-1266-3p 0 0 1
chr16:3486233|3486498 hsa-miR-1281 0 0 1
chr16:3486233|3486498 hsa-miR-1321 0 0 1
chr16:3486233|3486498 hsa-miR-146b-3p 0 0 1
chr16:3486233|3486498 hsa-miR-1289 0 0 1
chr16:3486233|3486498 hsa-miR-525-5p 0 0 1
chr16:3486233|3486498 hsa-miR-483-5p 0 0 1
chr16:3486233|3486498 hsa-miR-338-3p 0 0 1
chr16:3486233|3486498 hsa-miR-324-3p 0 0 1
chr16:3486233|3486498 hsa-miR-342-5p 0 0 1
chr16:3486233|3486498 hsa-miR-520a-5p 0 0 1
chr16:3486233|3486498 hsa-miR-105 0 0 1
chr16:3486233|3486498 hsa-miR-1285 0 0 1
chr16:3486233|3486498 hsa-miR-596 0 1 0
chr16:3486233|3486498 hsa-miR-636 1 0 0
chr16:3486233|3486498 hsa-miR-663a 1 1 0
chr16:3486233|3486498 hsa-miR-1913 1 0 0
chr16:3486233|3486498 hsa-miR-1976 1 0 0
chr16:3486233|3486498 hsa-miR-718 0 1 0
chr16:3486233|3486498 hsa-miR-4321 0 1 0
chr16:3486233|3486498 hsa-miR-4292 0 1 0
chr16:3486233|3486498 hsa-miR-3649 0 1 0
chr16:3486233|3486498 hsa-miR-4488 0 1 0
chr16:3486233|3486498 hsa-miR-4510 0 1 0
chr16:3486233|3486498 hsa-miR-4651 0 1 0
chr16:3486233|3486498 hsa-miR-4689 0 1 0
chr16:3486233|3486498 hsa-miR-4739 1 1 0
chr16:3486233|3486498 hsa-miR-4779 0 1 0
chr16:3486233|3486498 hsa-miR-6090 1 0 0
chr16:3486233|3486498 hsa-miR-6127 0 1 0
chr16:3486233|3486498 hsa-miR-6133 0 1 0
chr16:3486233|3486498 hsa-miR-6860 0 1 0
chr16:3486233|3486498 hsa-miR-8089 1 0 0
chr16:3486233|3486498 hsa-miR-105-5p 0 1 0
chr16:3486233|3486498 hsa-miR-4433b-3p 1 0 0
chr16:3486233|3486498 hsa-miR-18a-3p 0 1 0
chr16:3486233|3486498 hsa-miR-6747-3p 0 1 0
chr16:3486233|3486498 hsa-miR-6861-5p 1 1 0
chr16:3486233|3486498 hsa-miR-7106-5p 1 1 0
chr16:3486233|3486498 hsa-miR-6894-5p 1 0 0
chr16:3486233|3486498 hsa-miR-25-5p 0 1 0
chr16:3486233|3486498 hsa-miR-766-5p 0 1 0
chr16:3486233|3486498 hsa-miR-6880-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6762-3p 1 0 0
chr16:3486233|3486498 hsa-miR-3189-5p 1 0 0
chr16:3486233|3486498 hsa-miR-4728-3p 1 0 0
chr16:3486233|3486498 hsa-miR-6845-3p 1 0 0
chr16:3486233|3486498 hsa-miR-6742-5p 0 1 0
chr16:3486233|3486498 hsa-miR-3180-3p 0 1 0
chr16:3486233|3486498 hsa-miR-6829-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6798-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6760-5p 0 1 0
chr16:3486233|3486498 hsa-miR-2467-3p 0 1 0
chr16:3486233|3486498 hsa-miR-6782-5p 0 1 0
chr16:3486233|3486498 hsa-miR-6882-3p 1 1 0
chr16:3486233|3486498 hsa-miR-4436b-5p 1 0 0
chr16:3486233|3486498 hsa-miR-7109-5p 1 1 0
chr16:3486233|3486498 hsa-miR-4793-5p 1 1 0
chr16:3486233|3486498 hsa-miR-4763-5p 1 1 0
chr16:3486233|3486498 hsa-miR-4786-3p 1 0 0
chr16:3486233|3486498 hsa-miR-6894-3p 1 1 0
chr16:3486233|3486498 hsa-miR-4691-3p 0 1 0
chr16:3486233|3486498 hsa-miR-6514-3p 0 1 0
chr16:3486233|3486498 hsa-miR-6749-5p 1 0 0
chr16:3486233|3486498 hsa-miR-7111-3p 1 1 0
chr16:3486233|3486498 hsa-miR-5196-3p 0 1 0
chr16:3486233|3486498 hsa-miR-339-5p 1 0 0
chr16:3486233|3486498 hsa-miR-3922-5p 1 0 0
chr16:3486233|3486498 hsa-miR-4687-5p 1 0 0
chr16:3486233|3486498 hsa-miR-7112-3p 1 1 0
chr16:3486233|3486498 hsa-miR-6752-3p 0 1 0
chr16:3486233|3486498 hsa-miR-6767-5p 0 1 0
chr16:3486233|3486498 hsa-miR-3620-3p 0 1 0
chr16:3486233|3486498 hsa-miR-219b-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6838-3p 1 0 0
chr16:3486233|3486498 hsa-miR-10a-5p 0 1 0
chr16:3486233|3486498 hsa-miR-885-5p 1 0 0
chr16:3486233|3486498 hsa-miR-1207-5p 1 0 0
chr16:3486233|3486498 hsa-miR-4763-3p 1 1 0
chr16:3486233|3486498 hsa-miR-6812-5p 0 1 0
chr16:3486233|3486498 hsa-miR-6816-5p 0 1 0
chr16:3486233|3486498 hsa-miR-6775-5p 1 0 0
chr16:3486233|3486498 hsa-miR-3180 0 1 0
chr16:3486233|3486498 hsa-miR-6737-5p 0 1 0
chr16:3486233|3486498 hsa-miR-6743-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6756-5p 1 1 0
chr16:3486233|3486498 hsa-miR-6819-5p 0 1 0
chr16:3486233|3486498 hsa-miR-6851-5p 1 0 0
chr16:3486233|3486498 hsa-miR-7107-5p 1 1 0
chr16:3486233|3486498 hsa-miR-1249-5p 1 1 0
chr16:3486233|3486498 hsa-miR-6722-3p 0 1 0
chr16:3486233|3486498 hsa-miR-6774-5p 1 1 0
chr16:3486233|3486498 hsa-miR-6797-5p 1 1 0
chr16:3486233|3486498 hsa-miR-7111-5p 1 1 0
chr16:3486233|3486498 hsa-miR-4728-5p 1 1 0
chr16:3486233|3486498 hsa-miR-5189-5p 0 1 0
chr16:3486233|3486498 hsa-miR-1237-5p 0 1 0
chr16:3486233|3486498 hsa-miR-1909-3p 1 1 0
chr16:3486233|3486498 hsa-miR-328-5p 1 1 0
chr16:3486233|3486498 hsa-miR-4649-5p 1 0 0
chr16:3486233|3486498 hsa-miR-4745-3p 1 0 0
chr16:3486233|3486498 hsa-miR-6735-5p 1 1 0
chr16:3486233|3486498 hsa-miR-6858-5p 1 1 0
chr16:3486233|3486498 hsa-miR-3187-5p 0 1 0
chr16:3486233|3486498 hsa-miR-4697-5p 0 1 0
chr16:3486233|3486498 hsa-miR-6831-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6885-5p 1 1 0
chr16:3486233|3486498 hsa-miR-3085-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6799-3p 1 0 0
chr16:3486233|3486498 hsa-miR-4472 0 1 0
chr16:3486233|3486498 hsa-miR-3184-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6791-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6762-5p 1 0 0
chr16:3486233|3486498 hsa-miR-4722-3p 1 0 0
chr16:3486233|3486498 hsa-miR-6893-3p 1 0 0
chr16:3486233|3486498 hsa-miR-6805-3p 1 0 0
chr16:3486233|3486498 hsa-miR-6511b-3p 1 0 0
chr16:3486233|3486498 hsa-miR-4756-5p 0 1 0
chr16:3486233|3486498 hsa-miR-330-5p 0 1 0
chr16:3486233|3486498 hsa-miR-10394-5p 1 0 0
chr16:3486233|3486498 hsa-miR-6876-3p 0 1 0
chr16:3486233|3486498 hsa-miR-4690-3p 1 0 0
chr16:3486233|3486498 hsa-miR-1-5p 0 1 0
chr16:3486233|3486498 hsa-miR-4799-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:3486233|3486498
ORF Type ORF1
Protein Length 81
Nucleotide Length 246
Protein Sequence MGSSGGGRTQVPEAPSAQGCSSLSLLLRLGQGGAARTLCHGFVTLQLCWAGLRPPPHPCIGGQGRQQAAFGMQGGEDARSM
Nucleotide Sequence CTGGGCAGCTCTGGAGGCGGAAGGACACAGGTCCCTGAGGCCCCGTCTGCCCAGGGTTGTTCCTCCCTCTCCCTCCTCCTCAGGCTGGGGCAGGGTGGCGCCGCTAGGACCCTCTGCCATGGCTTTGTGACACTGCAGCTATGCTGGGCGGGACTCCGCCCCCCACCCCACCCCTGCATCGGAGGGCAGGGCAGGCAGCAAGCAGCATTTGGAATGCAGGGTGGAGAGGATGCTAGAAGTATGTGA
CircID chr16:3486233|3486498
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence LRARGWAALEAEGHRSLRPRLPRVVPPSPSSSGWGRVAPLGPSAMAL
Nucleotide Sequence CTGAGAGCCCGTGGCTGGGCAGCTCTGGAGGCGGAAGGACACAGGTCCCTGAGGCCCCGTCTGCCCAGGGTTGTTCCTCCCTCTCCCTCCTCCTCAGGCTGGGGCAGGGTGGCGCCGCTAGGACCCTCTGCCATGGCTTTGTGA
CircID chr16:3486233|3486498
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MPWLCDTAAMLGGTPPPTPPLHRRAGQAASSIWNAGWRGC
Nucleotide Sequence CTGCCATGGCTTTGTGACACTGCAGCTATGCTGGGCGGGACTCCGCCCCCCACCCCACCCCTGCATCGGAGGGCAGGGCAGGCAGCAAGCAGCATTTGGAATGCAGGGTGGAGAGGATGCTAG
CircID chr16:3486233|3486498
ORF Type ORF4
Protein Length 69
Nucleotide Length 207
Protein Sequence MPCPPMQGWGGGRSPAQHSCSVTKPWQRVLAAPPCPSLRRREREEQPWADGASGTCVLPPPELPSHGLS
Nucleotide Sequence CTGCCCTGCCCTCCGATGCAGGGGTGGGGTGGGGGGCGGAGTCCCGCCCAGCATAGCTGCAGTGTCACAAAGCCATGGCAGAGGGTCCTAGCGGCGCCACCCTGCCCCAGCCTGAGGAGGAGGGAGAGGGAGGAACAACCCTGGGCAGACGGGGCCTCAGGGACCTGTGTCCTTCCGCCTCCAGAGCTGCCCAGCCACGGGCTCTCA
CircID chr16:3486233|3486498
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MLLAACPALRCRGGVGGGVPPSIAAVSQSHGRGS
Nucleotide Sequence ATGCTGCTTGCTGCCTGCCCTGCCCTCCGATGCAGGGGTGGGGTGGGGGGCGGAGTCCCGCCCAGCATAGCTGCAGTGTCACAAAGCCATGGCAGAGGGTCCTAG
CircID chr16:3486233|3486498
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MHSKCCLLPALPSDAGVGWGAESRPA
Nucleotide Sequence CTGCATTCCAAATGCTGCTTGCTGCCTGCCCTGCCCTCCGATGCAGGGGTGGGGTGGGGGGCGGAGTCCCGCCCAGCATAG
CircID chr16:3486233|3486498
ORF Type ORF7
Protein Length 51
Nucleotide Length 153
Protein Sequence MQCHKAMAEGPSGATLPQPEEEGEGGTTLGRRGLRDLCPSASRAAQPRALR
Nucleotide Sequence CTGCAGTGTCACAAAGCCATGGCAGAGGGTCCTAGCGGCGCCACCCTGCCCCAGCCTGAGGAGGAGGGAGAGGGAGGAACAACCCTGGGCAGACGGGGCCTCAGGGACCTGTGTCCTTCCGCCTCCAGAGCTGCCCAGCCACGGGCTCTCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab